FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0971, 209 aa
  1>>>pF1KB0971 209 - 209 aa - 209 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5001+/-0.000593; mu= 13.7354+/- 0.036
 mean_var=77.3871+/-15.236, 0's: 0 Z-trim(113.7): 23  B-trim: 73 in 1/51
 Lambda= 0.145794
 statistics sampled from 14281 (14301) to 14281 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.439), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS280.1 LIN28A gene_id:79727|Hs108|chr1          ( 209) 1462 315.9 1.2e-86
CCDS34504.1 LIN28B gene_id:389421|Hs108|chr6       ( 250)  912 200.2 8.9e-52


>>CCDS280.1 LIN28A gene_id:79727|Hs108|chr1               (209 aa)
 initn: 1462 init1: 1462 opt: 1462  Z-score: 1669.3  bits: 315.9 E(32554): 1.2e-86
Smith-Waterman score: 1462; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KB0 MGSVSNQQFAGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MGSVSNQQFAGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 RAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 RAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 ERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 ERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQ
              130       140       150       160       170       180

              190       200         
pF1KB0 GPSAQGKPTYFREEEEEIHSPTLLPEAQN
       :::::::::::::::::::::::::::::
CCDS28 GPSAQGKPTYFREEEEEIHSPTLLPEAQN
              190       200         

>>CCDS34504.1 LIN28B gene_id:389421|Hs108|chr6            (250 aa)
 initn: 915 init1: 861 opt: 912  Z-score: 1043.0  bits: 200.2 E(32554): 8.9e-52
Smith-Waterman score: 912; 68.5% identity (78.7% similar) in 197 aa overlap (11-205:4-192)

               10        20        30        40        50        60
pF1KB0 MGSVSNQQFAGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTA
                 :: .:.. : : . :: :    .: :.:.:.: ::::::::::::.::  
CCDS34        MAEGGASKGGGEEPGKLPEPA---EEESQVLRGTGHCKWFNVRMGFGFISMIN
                      10        20           30        40        50

               70        80        90       100       110       120
pF1KB0 RAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGS
       : :  :: ::::::::::: ::::::::::: ::::::::.:::::::::::::  :.::
CCDS34 REGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS
               60        70        80        90       100       110

              130       140       150       160       170          
pF1KB0 ERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLK--A
       :::::::..:::. ::::::::::::::::::.:::::::::.:::: ::::.:: :  :
CCDS34 ERRPKGKTLQKRKPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKNVA
              120       130       140       150       160       170

      180       190       200                                      
pF1KB0 QQGPSAQGKPTYFREEEEEIHSPTLLPEAQN                             
       :   :.::     :.: :     . ::                                 
CCDS34 QPPASSQG-----RQEAESQPCTSTLPREVGGGHGCTSPPFPQEARAEISERSGRSPQEA
                   180       190       200       210       220     




209 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:34:32 2016 done: Sat Nov  5 17:34:33 2016
 Total Scan time:  2.220 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]