FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0972, 437 aa
  1>>>pF1KB0972 437 - 437 aa - 437 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6165+/-0.000957; mu= 12.5230+/- 0.058
 mean_var=115.0460+/-22.390, 0's: 0 Z-trim(108.8): 20  B-trim: 0 in 0/51
 Lambda= 0.119574
 statistics sampled from 10450 (10457) to 10450 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.321), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS44626.1 EEF1G gene_id:1937|Hs108|chr11         ( 437) 2977 524.5 8.1e-149
CCDS34412.1 VARS gene_id:7407|Hs108|chr6           (1264)  433 85.9 2.4e-16


>>CCDS44626.1 EEF1G gene_id:1937|Hs108|chr11              (437 aa)
 initn: 2977 init1: 2977 opt: 2977  Z-score: 2785.2  bits: 524.5 E(32554): 8.1e-149
Smith-Waterman score: 2977; 100.0% identity (100.0% similar) in 437 aa overlap (1-437:1-437)

               10        20        30        40        50        60
pF1KB0 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 MHHNKQATENAKEEVRRILGLLDAYLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MHHNKQATENAKEEVRRILGLLDAYLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAETQPKKDTPRKEKGSREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAETQPKKDTPRKEKGSREE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 DTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 ILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWE
              370       380       390       400       410       420

              430       
pF1KB0 GAFQHVGKAFNQGKIFK
       :::::::::::::::::
CCDS44 GAFQHVGKAFNQGKIFK
              430       

>>CCDS34412.1 VARS gene_id:7407|Hs108|chr6                (1264 aa)
 initn: 326 init1: 237 opt: 433  Z-score: 406.8  bits: 85.9 E(32554): 2.4e-16
Smith-Waterman score: 447; 33.9% identity (60.8% similar) in 286 aa overlap (5-274:3-275)

                 10        20                 30        40         
pF1KB0 MAAGTLYT--YPENWRAFKALIAAQYS---------GAQVRVLSAPPHFHFGQTNRTPEF
           :::.  .:. . ...:::::.:.         ::. :.   ::      :.:::  
CCDS34   MSTLYVSPHPDAFPSLRALIAARYGEAGEGPGWGGAHPRICLQPP-----PTSRTP--
                 10        20        30        40             50   

      50        60         70        80         90       100       
pF1KB0 LRKFPAGKVPAFE-GDDGFCVFESNAIAYYVSNEELRG-STPEAAAQVVQWVSFADSDIV
          ::  ..::.: :  :. :. ..:.:  .    : : .  .::. : ::::.::....
CCDS34 ---FPPPRLPALEQGPGGLWVWGATAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELI
                 60        70        80        90       100        

       110       120       130       140       150       160       
pF1KB0 PPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAYLKTRTFLVGERVTLADITVVCT
       : :   ..:.:: .. . :  . .   . : :. :. .:. .:.:.::  ::::...: .
CCDS34 PAACGATLPALG-LRSSAQDPQAVLGALGRALSPLEEWLRLHTYLAGEAPTLADLAAVTA
      110       120        130       140       150       160       

       170       180       190       200       210       220       
pF1KB0 LLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAETQ--
       ::  .. ::.:  :. . :..:::.::. ::.:::::::: :      .. .   :.   
CCDS34 LLLPFRYVLDPPARRIWNNVTRWFVTCVRQPEFRAVLGEVVLYSGARPLSHQPGPEAPAL
       170       180       190       200       210       220       

         230        240       250       260       270       280    
pF1KB0 PKKDTP-RKEKGSREEKQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLP
       ::  .  .::  .::. .: : ..: ...   : : :.  . :.    .:          
CCDS34 PKTAAQLKKEAKKREKLEKFQQKQKIQQQQ--PPPGEKKPKPEKREKRDPGVITYDLPTP
       230       240       250         260       270       280     

          290       300       310       320       330       340    
pF1KB0 KSTFVLDEFKRKYSNEDTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITG
                                                                   
CCDS34 PGEKKDVSGPMPDSYSPRYVEAAWYPWWEQQGFFKPEYGRPNVSAANPRGVFMMCIPPPN
         290       300       310       320       330       340     




437 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:35:09 2016 done: Sat Nov  5 17:35:09 2016
 Total Scan time:  2.500 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]