Result of FASTA (omim) for
pF1KB0977
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0977, 188 aa
1>>>pF1KB0977 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0332+/-0.000337; mu= 11.1438+/- 0.021
mean_var=106.4081+/-21.152, 0's: 0 Z-trim(117.9): 50 B-trim: 1583 in 2/54
Lambda= 0.124333
statistics sampled from 30352 (30403) to 30352 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.356), width: 16
Scan time: 5.850
The best scores are: opt bits E(85289)
XP_011542251 (OMIM: 300327) PREDICTED: protein SSX ( 188) 1282 239.7 2.1e-63
XP_016885247 (OMIM: 300327) PREDICTED: protein SSX ( 188) 1282 239.7 2.1e-63
NP_783729 (OMIM: 300327) protein SSX5 isoform b [H ( 188) 1282 239.7 2.1e-63
NP_066295 (OMIM: 300327) protein SSX5 isoform a [H ( 229) 1130 212.5 3.9e-55
NP_066294 (OMIM: 300325) protein SSX3 [Homo sapien ( 188) 1102 207.4 1.1e-53
NP_783629 (OMIM: 300192,300813) protein SSX2 isofo ( 188) 1093 205.8 3.3e-53
NP_775494 (OMIM: 300542) protein SSX7 [Homo sapien ( 188) 1067 201.2 8.4e-52
XP_016885248 (OMIM: 300326) PREDICTED: protein SSX ( 188) 1000 189.1 3.5e-48
NP_005627 (OMIM: 300326) protein SSX4 isoform a [H ( 188) 1000 189.1 3.5e-48
NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo ( 188) 991 187.5 1.1e-47
NP_001265620 (OMIM: 300813,312820) protein SSX1 [H ( 188) 991 187.5 1.1e-47
XP_011542187 (OMIM: 300325) PREDICTED: protein SSX ( 170) 891 169.6 2.5e-42
NP_001265626 (OMIM: 300192,300813) protein SSX2 is ( 214) 887 168.9 4.9e-42
NP_003138 (OMIM: 300192,300813) protein SSX2 isofo ( 223) 887 168.9 5e-42
XP_016884919 (OMIM: 300542) PREDICTED: protein SSX ( 223) 853 162.8 3.4e-40
XP_016884920 (OMIM: 300542) PREDICTED: protein SSX ( 129) 614 119.8 1.8e-27
NP_783856 (OMIM: 300326) protein SSX4 isoform b [H ( 153) 584 114.4 8.7e-26
XP_011521131 (OMIM: 609759) PREDICTED: probable hi ( 377) 181 42.5 0.00098
NP_001091643 (OMIM: 609759) probable histone-lysin ( 492) 181 42.6 0.0012
XP_005256331 (OMIM: 609759) PREDICTED: probable hi ( 492) 181 42.6 0.0012
NP_001297143 (OMIM: 609760) histone-lysine N-methy ( 894) 183 43.2 0.0015
NP_064612 (OMIM: 609760) histone-lysine N-methyltr ( 894) 183 43.2 0.0015
XP_011521133 (OMIM: 609759) PREDICTED: probable hi ( 172) 167 39.7 0.0031
>>XP_011542251 (OMIM: 300327) PREDICTED: protein SSX5 is (188 aa)
initn: 1282 init1: 1282 opt: 1282 Z-score: 1259.4 bits: 239.7 E(85289): 2.1e-63
Smith-Waterman score: 1282; 99.5% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
XP_011 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
::::::::
XP_011 SDPQEDDE
>>XP_016885247 (OMIM: 300327) PREDICTED: protein SSX5 is (188 aa)
initn: 1282 init1: 1282 opt: 1282 Z-score: 1259.4 bits: 239.7 E(85289): 2.1e-63
Smith-Waterman score: 1282; 99.5% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
XP_016 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
::::::::
XP_016 SDPQEDDE
>>NP_783729 (OMIM: 300327) protein SSX5 isoform b [Homo (188 aa)
initn: 1282 init1: 1282 opt: 1282 Z-score: 1259.4 bits: 239.7 E(85289): 2.1e-63
Smith-Waterman score: 1282; 99.5% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
NP_783 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
::::::::
NP_783 SDPQEDDE
>>NP_066295 (OMIM: 300327) protein SSX5 isoform a [Homo (229 aa)
initn: 1130 init1: 1130 opt: 1130 Z-score: 1110.9 bits: 212.5 E(85289): 3.9e-55
Smith-Waterman score: 1130; 99.4% identity (100.0% similar) in 166 aa overlap (23-188:64-229)
10 20 30 40 50
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMK
.:::::::::::::::::::::::::::::
NP_066 IHLVNLSPFWKVGREPASSIKALLCGRGEARAFDDIAKYFSEKEWEKMKASEKIIYVYMK
40 50 60 70 80 90
60 70 80 90 100 110
pF1KB0 RKYEAMTKLGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 RKYEAMTKLGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKIT
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB0 PEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 PEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERK
160 170 180 190 200 210
180
pF1KB0 QLVIYEEISDPQEDDE
::::::::::::::::
NP_066 QLVIYEEISDPQEDDE
220
>>NP_066294 (OMIM: 300325) protein SSX3 [Homo sapiens] (188 aa)
initn: 1102 init1: 1102 opt: 1102 Z-score: 1084.9 bits: 207.4 E(85289): 1.1e-53
Smith-Waterman score: 1102; 84.0% identity (94.1% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::.:.::: ::.:::.:.::::::::::::..::::::.::::.:::::::::::::
NP_066 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::: :: :::::::.:::::::::::::::::..::::::::::::::: :.::::::
NP_066 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
: :: :::::::::.:::: : :: .::::.: ::::::.::::::.::::::::::::
NP_066 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
NP_066 SDPEEDDE
>>NP_783629 (OMIM: 300192,300813) protein SSX2 isoform b (188 aa)
initn: 1093 init1: 1093 opt: 1093 Z-score: 1076.2 bits: 205.8 E(85289): 3.3e-53
Smith-Waterman score: 1093; 83.5% identity (94.7% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::::.::: ::.:::.:.::::::::::::..:::::::::::.:::::::::::::
NP_783 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.::::::
NP_783 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
:::. :::::::::.::.: : :: .::::... ::::::.::::::.::::::::::::
NP_783 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
NP_783 SDPEEDDE
>>NP_775494 (OMIM: 300542) protein SSX7 [Homo sapiens] (188 aa)
initn: 1067 init1: 1067 opt: 1067 Z-score: 1051.0 bits: 201.2 E(85289): 8.4e-52
Smith-Waterman score: 1067; 82.4% identity (93.6% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::::.::::.:.:::.:.::.:::::::::.:::::::. ::: :::::::::::::
NP_775 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
:::::::::::.: ..:.:::::::: :.:::::.::::: ::: ::::: :.::::::
NP_775 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
::::::::::: ::.::.: : :: .::::.::::::::::::::::.::::::::::::
NP_775 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
NP_775 SDPEEDDE
>>XP_016885248 (OMIM: 300326) PREDICTED: protein SSX4 is (188 aa)
initn: 1000 init1: 1000 opt: 1000 Z-score: 986.0 bits: 189.1 E(85289): 3.5e-48
Smith-Waterman score: 1000; 77.7% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::::.:::: .:: .:..:::::::::::.:::::::.::::.::::: .::.:::
XP_016 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::.:::::::.::.:::.:::: :: :. ::::.:::::: :: ::::: :.:::::
XP_016 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
: : :::::::::.:::: : :. .: ::.::::::::::::::::.:::::::.::::
XP_016 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
XP_016 SDPEEDDE
>>NP_005627 (OMIM: 300326) protein SSX4 isoform a [Homo (188 aa)
initn: 1000 init1: 1000 opt: 1000 Z-score: 986.0 bits: 189.1 E(85289): 3.5e-48
Smith-Waterman score: 1000; 77.7% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::::.:::: .:: .:..:::::::::::.:::::::.::::.::::: .::.:::
NP_005 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::.:::::::.::.:::.:::: :: :. ::::.:::::: :: ::::: :.:::::
NP_005 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
: : :::::::::.:::: : :. .: ::.::::::::::::::::.:::::::.::::
NP_005 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
NP_005 SDPEEDDE
>>NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo sap (188 aa)
initn: 991 init1: 991 opt: 991 Z-score: 977.3 bits: 187.5 E(85289): 1.1e-47
Smith-Waterman score: 991; 76.6% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::.:..::: .. .: .::::::: :::.:::.::: :::: ::::::.:.::::
NP_005 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::.:::::: ::...:::::::::: :: ::::::::::::. :.::: :.::::.
NP_005 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
:::::: :::::::.::::.: :: : :::.:: :::::::::::::.::::::::::::
NP_005 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
NP_005 SDPEEDDE
188 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:38:10 2016 done: Sat Nov 5 17:38:11 2016
Total Scan time: 5.850 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]