FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0979, 230 aa
  1>>>pF1KB0979 230 - 230 aa - 230 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1731+/-0.00104; mu= 10.6306+/- 0.062
 mean_var=141.9415+/-29.884, 0's: 0 Z-trim(107.3): 132  B-trim: 0 in 0/48
 Lambda= 0.107651
 statistics sampled from 9343 (9504) to 9343 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.292), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS7803.1 RNF141 gene_id:50862|Hs108|chr11        ( 230) 1548 251.9 2.6e-67


>>CCDS7803.1 RNF141 gene_id:50862|Hs108|chr11             (230 aa)
 initn: 1548 init1: 1548 opt: 1548  Z-score: 1321.8  bits: 251.9 E(32554): 2.6e-67
Smith-Waterman score: 1548; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:1-230)

               10        20        30        40        50        60
pF1KB0 MGQQISDQTQLVINKLPEKVAKHVTLVRESGSLTYEEFLGRVAELNDVTAKVASGQEKHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MGQQISDQTQLVINKLPEKVAKHVTLVRESGSLTYEEFLGRVAELNDVTAKVASGQEKHL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LFEVQPGSDSSAFWKVVVRVVCTKINKSSGIVEASRIMNLYQFIQLYKDITSQAAGVLAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LFEVQPGSDSSAFWKVVVRVVCTKINKSSGIVEASRIMNLYQFIQLYKDITSQAAGVLAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SSTSEEPDENSSSVTSCQASLWMGRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SSTSEEPDENSSSVTSCQASLWMGRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDK
              130       140       150       160       170       180

              190       200       210       220       230
pF1KB0 WSDRHRNCPICRLQMTGANESWVVSDAPTEDDMANYILNMADEAGQPHRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 WSDRHRNCPICRLQMTGANESWVVSDAPTEDDMANYILNMADEAGQPHRP
              190       200       210       220       230




230 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:39:17 2016 done: Sat Nov  5 17:39:17 2016
 Total Scan time:  2.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]