FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0979, 230 aa
  1>>>pF1KB0979 230 - 230 aa - 230 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3090+/-0.000443; mu= 15.8701+/- 0.027
 mean_var=157.7144+/-34.089, 0's: 0 Z-trim(114.7): 207  B-trim: 1098 in 1/53
 Lambda= 0.102127
 statistics sampled from 24328 (24644) to 24328 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.289), width:  16
 Scan time:  6.440

The best scores are:                                      opt bits E(85289)
NP_057506 (OMIM: 616641) RING finger protein 141 [ ( 230) 1548 239.8 2.9e-63


>>NP_057506 (OMIM: 616641) RING finger protein 141 [Homo  (230 aa)
 initn: 1548 init1: 1548 opt: 1548  Z-score: 1256.7  bits: 239.8 E(85289): 2.9e-63
Smith-Waterman score: 1548; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:1-230)

               10        20        30        40        50        60
pF1KB0 MGQQISDQTQLVINKLPEKVAKHVTLVRESGSLTYEEFLGRVAELNDVTAKVASGQEKHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MGQQISDQTQLVINKLPEKVAKHVTLVRESGSLTYEEFLGRVAELNDVTAKVASGQEKHL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LFEVQPGSDSSAFWKVVVRVVCTKINKSSGIVEASRIMNLYQFIQLYKDITSQAAGVLAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LFEVQPGSDSSAFWKVVVRVVCTKINKSSGIVEASRIMNLYQFIQLYKDITSQAAGVLAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SSTSEEPDENSSSVTSCQASLWMGRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SSTSEEPDENSSSVTSCQASLWMGRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDK
              130       140       150       160       170       180

              190       200       210       220       230
pF1KB0 WSDRHRNCPICRLQMTGANESWVVSDAPTEDDMANYILNMADEAGQPHRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 WSDRHRNCPICRLQMTGANESWVVSDAPTEDDMANYILNMADEAGQPHRP
              190       200       210       220       230




230 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:39:18 2016 done: Sat Nov  5 17:39:19 2016
 Total Scan time:  6.440 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]