FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0986, 454 aa
  1>>>pF1KB0986 454 - 454 aa - 454 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5671+/-0.00106; mu= 3.3303+/- 0.063
 mean_var=200.1528+/-40.197, 0's: 0 Z-trim(110.1): 47  B-trim: 0 in 0/52
 Lambda= 0.090655
 statistics sampled from 11305 (11342) to 11305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.348), width:  16
 Scan time:  3.560

The best scores are:                                      opt bits E(32554)
CCDS32404.1 CDR2 gene_id:1039|Hs108|chr16          ( 454) 2907 392.9 3.5e-109
CCDS11710.2 CDR2L gene_id:30850|Hs108|chr17        ( 465) 1007 144.4 2.3e-34


>>CCDS32404.1 CDR2 gene_id:1039|Hs108|chr16               (454 aa)
 initn: 2907 init1: 2907 opt: 2907  Z-score: 2073.6  bits: 392.9 E(32554): 3.5e-109
Smith-Waterman score: 2907; 100.0% identity (100.0% similar) in 454 aa overlap (1-454:1-454)

               10        20        30        40        50        60
pF1KB0 MLAENLVEEFEMKEDEPWYDHQDLQQDLQLAAELGKTLLDRNTELEDSVQQMYTTNQEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MLAENLVEEFEMKEDEPWYDHQDLQQDLQLAAELGKTLLDRNTELEDSVQQMYTTNQEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVADSKASQQKILSLTETIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVADSKASQQKILSLTETIE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 CLQTNIDHLQSQVEELKSSGQGRRSPGKCDQEKPAPSFACLKELYDLRQHFVYDHVFAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CLQTNIDHLQSQVEELKSSGQGRRSPGKCDQEKPAPSFACLKELYDLRQHFVYDHVFAEK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 ITSLQGQPSPDEEENEHLKKTVTMLQAQLSLERQKRVTMEEEYGLVLKENSELEQQLGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ITSLQGQPSPDEEENEHLKKTVTMLQAQLSLERQKRVTMEEEYGLVLKENSELEQQLGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 GAYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLYVPFKEPSQSLLEEMFLTVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GAYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLYVPFKEPSQSLLEEMFLTVPE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 SHRKPLKRSSSETILSSLAGSDIVKGHEETCIRRAKAVKQRGISLLHEVDTQYSALKVKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SHRKPLKRSSSETILSSLAGSDIVKGHEETCIRRAKAVKQRGISLLHEVDTQYSALKVKY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 EELLKKCQEEQDSLSHKAVQTSRAAAKDLTGVNAQSEPVASGWELASVNPEPVSSPTTPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EELLKKCQEEQDSLSHKAVQTSRAAAKDLTGVNAQSEPVASGWELASVNPEPVSSPTTPP
              370       380       390       400       410       420

              430       440       450    
pF1KB0 EYKALFKEIFSCIKKTKQEIDEQRTKYRSLSSHS
       ::::::::::::::::::::::::::::::::::
CCDS32 EYKALFKEIFSCIKKTKQEIDEQRTKYRSLSSHS
              430       440       450    

>>CCDS11710.2 CDR2L gene_id:30850|Hs108|chr17             (465 aa)
 initn: 1091 init1: 626 opt: 1007  Z-score: 730.5  bits: 144.4 E(32554): 2.3e-34
Smith-Waterman score: 1107; 45.0% identity (71.0% similar) in 462 aa overlap (7-449:7-463)

               10        20        30        40        50        60
pF1KB0 MLAENLVEEFEMKEDEPWYDHQDLQQDLQLAAELGKTLLDRNTELEDSVQQMYTTNQEQL
             .:.:  .:.: :::.:::.:::.::::::::::.:: ::: :.::::.::.::.
CCDS11 MRRAAGMEDFSAEEEESWYDQQDLEQDLHLAAELGKTLLERNKELEGSLQQMYSTNEEQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVADSKASQQKILSLTETIE
       :::::::::.. ::..::::::::::::.:::.:: ::..:: .:::.:::: .::::::
CCDS11 QEIEYLTKQLDTLRHVNEQHAKVYEQLDLTARDLELTNHRLVLESKAAQQKIHGLTETIE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 CLQTNIDHLQSQVEELKSSGQGRRSPGKCDQEKPAPSFACLKELYDLRQHFVYDHVFAEK
        ::.....::.:::.:..  : :    : ....   .: :::::    .    : .:  .
CCDS11 RLQAQVEELQAQVEQLRGLEQLRVLREKRERRRTIHTFPCLKEL--CTSPRCKD-AFRLH
              130       140       150       160         170        

              190       200       210       220       230       240
pF1KB0 ITSLQGQPSPDEEENEHLKKTVTMLQAQLSLERQKRVTMEEEYGLVLKENSELEQQLGAT
        .::.  : : :.:::.:.  :  :..:.: :::..   :.::  ::.: ::::.::   
CCDS11 SSSLELGPRPLEQENERLQTLVGALRSQVSQERQRKERAEREYTAVLQEYSELERQLCEM
       180       190       200       210       220       230       

              250       260       270       280                 290
pF1KB0 GAYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLYVPFKEPSQS----------L
        : : :. :::::. :..:: :..  .. : .  . ..: .:. .  ..          :
CCDS11 EACRLRVQELEAELLELQQMKQAK-TYLLGPDDHLAEALLAPLTQAPEADDPQPGRGDDL
       240       250       260        270       280       290      

              300        310       320       330       340         
pF1KB0 LEEMFLTVPE-SHRKPLKRSSSETILSSLAGSDIVKGHEETCIRRAKAVKQRGISLLHEV
         .  .. :  :  . ...: :.: :......: .. :  .   .:..:..::.:.:.::
CCDS11 GAQDGVSSPAASPGHVVRKSCSDTALNAIVAKDPASRHAGNLTLHANSVRKRGMSILREV
        300       310       320       330       340       350      

     350       360       370       380       390             400   
pF1KB0 DTQYSALKVKYEELLKKCQEEQDSLSHKAVQTSRAAAKDLT------GVNAQSEPVASGW
       : :: ::  ::::::.::...  .. : .:::::  ..: .      : ..:.: : .: 
CCDS11 DEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPISRDSSWRDLRGGEEGQGE-VKAGE
        360       370       380       390       400       410      

           410         420       430       440       450    
pF1KB0 ELASVNPEPVSS--PTTPPEYKALFKEIFSCIKKTKQEIDEQRTKYRSLSSHS
       .  : . : :..    . :::::::::::: :.::: .:.  ..: .:     
CCDS11 KSLSQHVEAVDKRLEQSQPEYKALFKEIFSRIQKTKADINATKVKTHSSK   
         420       430       440       450       460        




454 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:41:08 2016 done: Sat Nov  5 17:41:08 2016
 Total Scan time:  3.560 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]