FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0986, 454 aa
  1>>>pF1KB0986 454 - 454 aa - 454 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0648+/-0.000444; mu= 0.8873+/- 0.028
 mean_var=246.3401+/-50.212, 0's: 0 Z-trim(117.7): 67  B-trim: 282 in 1/54
 Lambda= 0.081716
 statistics sampled from 29868 (29935) to 29868 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.351), width:  16
 Scan time:  9.170

The best scores are:                                      opt bits E(85289)
NP_001793 (OMIM: 117340) cerebellar degeneration-r ( 454) 2907 356.1 1.1e-97


>>NP_001793 (OMIM: 117340) cerebellar degeneration-relat  (454 aa)
 initn: 2907 init1: 2907 opt: 2907  Z-score: 1874.4  bits: 356.1 E(85289): 1.1e-97
Smith-Waterman score: 2907; 100.0% identity (100.0% similar) in 454 aa overlap (1-454:1-454)

               10        20        30        40        50        60
pF1KB0 MLAENLVEEFEMKEDEPWYDHQDLQQDLQLAAELGKTLLDRNTELEDSVQQMYTTNQEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLAENLVEEFEMKEDEPWYDHQDLQQDLQLAAELGKTLLDRNTELEDSVQQMYTTNQEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVADSKASQQKILSLTETIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVADSKASQQKILSLTETIE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 CLQTNIDHLQSQVEELKSSGQGRRSPGKCDQEKPAPSFACLKELYDLRQHFVYDHVFAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLQTNIDHLQSQVEELKSSGQGRRSPGKCDQEKPAPSFACLKELYDLRQHFVYDHVFAEK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 ITSLQGQPSPDEEENEHLKKTVTMLQAQLSLERQKRVTMEEEYGLVLKENSELEQQLGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITSLQGQPSPDEEENEHLKKTVTMLQAQLSLERQKRVTMEEEYGLVLKENSELEQQLGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 GAYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLYVPFKEPSQSLLEEMFLTVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLYVPFKEPSQSLLEEMFLTVPE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 SHRKPLKRSSSETILSSLAGSDIVKGHEETCIRRAKAVKQRGISLLHEVDTQYSALKVKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHRKPLKRSSSETILSSLAGSDIVKGHEETCIRRAKAVKQRGISLLHEVDTQYSALKVKY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 EELLKKCQEEQDSLSHKAVQTSRAAAKDLTGVNAQSEPVASGWELASVNPEPVSSPTTPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EELLKKCQEEQDSLSHKAVQTSRAAAKDLTGVNAQSEPVASGWELASVNPEPVSSPTTPP
              370       380       390       400       410       420

              430       440       450    
pF1KB0 EYKALFKEIFSCIKKTKQEIDEQRTKYRSLSSHS
       ::::::::::::::::::::::::::::::::::
NP_001 EYKALFKEIFSCIKKTKQEIDEQRTKYRSLSSHS
              430       440       450    




454 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:41:08 2016 done: Sat Nov  5 17:41:10 2016
 Total Scan time:  9.170 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]