FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0987, 258 aa
  1>>>pF1KB0987 258 - 258 aa - 258 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8264+/-0.000966; mu= 4.9094+/- 0.058
 mean_var=210.7654+/-43.538, 0's: 0 Z-trim(112.0): 80  B-trim: 49 in 1/52
 Lambda= 0.088344
 statistics sampled from 12789 (12863) to 12789 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.395), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS69069.1 TRIM40 gene_id:135644|Hs108|chr6       ( 258) 1753 235.5 2.9e-62
CCDS4675.1 TRIM40 gene_id:135644|Hs108|chr6        ( 229) 1033 143.6 1.1e-34


>>CCDS69069.1 TRIM40 gene_id:135644|Hs108|chr6            (258 aa)
 initn: 1753 init1: 1753 opt: 1753  Z-score: 1231.4  bits: 235.5 E(32554): 2.9e-62
Smith-Waterman score: 1753; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB0 MIPLQKDNQEEGVCPICQESLKEAVSTNCGHLFCRVCLTQHVEKASASGVFCCPLCRKPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MIPLQKDNQEEGVCPICQESLKEAVSTNCGHLFCRVCLTQHVEKASASGVFCCPLCRKPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 SEEVLGTGYICPNHQKRVCRFCEESRLLLCVECLVSPEHMSHHELTIENALSHYKERLNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SEEVLGTGYICPNHQKRVCRFCEESRLLLCVECLVSPEHMSHHELTIENALSHYKERLNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 RSRKLRKDIAELQRLKAQQEKKLQALQFQVDHGNHRLEAGPESQHQTREQLGALPQQWLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RSRKLRKDIAELQRLKAQQEKKLQALQFQVDHGNHRLEAGPESQHQTREQLGALPQQWLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QLEHMPAEAARILDISRAVTQLRSLVIDLERTAKELDTNTLKNAGDLLNRSAPQKLEVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QLEHMPAEAARILDISRAVTQLRSLVIDLERTAKELDTNTLKNAGDLLNRSAPQKLEVIY
              190       200       210       220       230       240

              250        
pF1KB0 PQLEKGVSELLLQPPQKL
       ::::::::::::::::::
CCDS69 PQLEKGVSELLLQPPQKL
              250        

>>CCDS4675.1 TRIM40 gene_id:135644|Hs108|chr6             (229 aa)
 initn: 1031 init1: 1031 opt: 1033  Z-score: 736.1  bits: 143.6 E(32554): 1.1e-34
Smith-Waterman score: 1481; 88.8% identity (88.8% similar) in 258 aa overlap (1-258:1-229)

               10        20        30        40        50        60
pF1KB0 MIPLQKDNQEEGVCPICQESLKEAVSTNCGHLFCRVCLTQHVEKASASGVFCCPLCRKPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MIPLQKDNQEEGVCPICQESLKEAVSTNCGHLFCRVCLTQHVEKASASGVFCCPLCRKPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 SEEVLGTGYICPNHQKRVCRFCEESRLLLCVECLVSPEHMSHHELTIENALSHYKERLNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SEEVLGTGYICPNHQKRVCRFCEESRLLLCVECLVSPEHMSHHELTIENALSHYKERLNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 RSRKLRKDIAELQRLKAQQEKKLQALQFQVDHGNHRLEAGPESQHQTREQLGALPQQWLG
       :::::::::::::::::::::::::::                             ::::
CCDS46 RSRKLRKDIAELQRLKAQQEKKLQALQ-----------------------------QWLG
              130       140                                    150 

              190       200       210       220       230       240
pF1KB0 QLEHMPAEAARILDISRAVTQLRSLVIDLERTAKELDTNTLKNAGDLLNRSAPQKLEVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QLEHMPAEAARILDISRAVTQLRSLVIDLERTAKELDTNTLKNAGDLLNRSAPQKLEVIY
             160       170       180       190       200       210 

              250        
pF1KB0 PQLEKGVSELLLQPPQKL
       ::::::::::::::::::
CCDS46 PQLEKGVSELLLQPPQKL
             220         




258 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:41:41 2016 done: Sat Nov  5 17:41:41 2016
 Total Scan time:  2.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]