FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0993, 278 aa
  1>>>pF1KB0993 278 - 278 aa - 278 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2746+/-0.000663; mu= 17.2221+/- 0.040
 mean_var=86.7300+/-16.696, 0's: 0 Z-trim(112.7): 7  B-trim: 0 in 0/52
 Lambda= 0.137718
 statistics sampled from 13426 (13430) to 13426 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.413), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS4875.1 CNPY3 gene_id:10695|Hs108|chr6          ( 278) 1836 373.8 7.4e-104
CCDS34701.1 CNPY4 gene_id:245812|Hs108|chr7        ( 248)  665 141.1 7.5e-34


>>CCDS4875.1 CNPY3 gene_id:10695|Hs108|chr6               (278 aa)
 initn: 1836 init1: 1836 opt: 1836  Z-score: 1978.0  bits: 373.8 E(32554): 7.4e-104
Smith-Waterman score: 1836; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)

               10        20        30        40        50        60
pF1KB0 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 SAFEETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SAFEETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 RFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 YRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 YRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRS
              190       200       210       220       230       240

              250       260       270        
pF1KB0 SSSKQRKELGGLEGDPSPEEDEGIQKASPLTHSPPDEL
       ::::::::::::::::::::::::::::::::::::::
CCDS48 SSSKQRKELGGLEGDPSPEEDEGIQKASPLTHSPPDEL
              250       260       270        

>>CCDS34701.1 CNPY4 gene_id:245812|Hs108|chr7             (248 aa)
 initn: 639 init1: 489 opt: 665  Z-score: 721.2  bits: 141.1 E(32554): 7.5e-34
Smith-Waterman score: 665; 44.9% identity (74.4% similar) in 227 aa overlap (17-238:6-231)

               10        20        30        40        50        60
pF1KB0 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
                       : .::.:.: . :   ..   :..:  :::::::::: ...::.
CCDS34            MGPVRLGILLFLFLAVHEAWAGMLKEEDDDTERLPSKCEVCKLLSTELQ
                          10        20        30        40         

               70        80          90       100       110        
pF1KB0 SAFEETGKTKEVIGTGYGILD--QKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTG
       . . .::...::.  :  .::  ..   : :. :. :: :. :..:.:.::::.: :: :
CCDS34 AELSRTGRSREVLELGQ-VLDTGKRKRHVPYSVSETRLEEALENLCERILDYSVHAERKG
      50        60         70        80        90       100        

      120       130       140       150       160       170        
pF1KB0 SNRFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIE
       : :.:::.:.:. ::..::.::::: . :: :::.: :.::. :::::....::::... 
CCDS34 SLRYAKGQSQTMATLKGLVQKGVKVDLGIPLELWDEPSVEVTYLKKQCETMLEEFEDIVG
      110       120       130       140       150       160        

      180       190       200       210          220       230     
pF1KB0 DWYRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKK---GDTAALGGKKSKKKSSRAKA
       ::: .:::. : .::: .::: . .:.:: : :.::.   :.  . : ......  . . 
CCDS34 DWYFHHQEQPLQNFLCEGHVLPAAETACLQETWTGKEITDGEEKTEGEEEQEEEEEEEEE
      170       180       190       200       210       220        

         240       250       260       270        
pF1KB0 AGGRSSSSKQRKELGGLEGDPSPEEDEGIQKASPLTHSPPDEL
        ::                                        
CCDS34 EGGDKMTKTGSHPKLDREDL                       
      230       240                               




278 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:42:55 2016 done: Sat Nov  5 17:42:55 2016
 Total Scan time:  2.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]