Result of FASTA (omim) for
pF1KB0993
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0993, 278 aa
1>>>pF1KB0993 278 - 278 aa - 278 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7738+/-0.000298; mu= 14.1753+/- 0.019
mean_var=89.3091+/-17.859, 0's: 0 Z-trim(119.3): 12 B-trim: 1021 in 1/53
Lambda= 0.135715
statistics sampled from 33263 (33275) to 33263 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.39), width: 16
Scan time: 8.260
The best scores are: opt bits E(85289)
NP_006577 (OMIM: 610774) protein canopy homolog 3 ( 278) 1836 368.8 6.4e-102
NP_001305774 (OMIM: 610774) protein canopy homolog ( 189) 1236 251.2 1.1e-66
NP_001305771 (OMIM: 610774) protein canopy homolog ( 311) 1234 250.9 2.1e-66
NP_001305777 (OMIM: 610774) protein canopy homolog ( 151) 806 166.9 2e-41
NP_689968 (OMIM: 610047) protein canopy homolog 4 ( 248) 665 139.5 6.1e-33
NP_001305776 (OMIM: 610774) protein canopy homolog ( 116) 602 126.9 1.7e-29
>>NP_006577 (OMIM: 610774) protein canopy homolog 3 isof (278 aa)
initn: 1836 init1: 1836 opt: 1836 Z-score: 1950.7 bits: 368.8 E(85289): 6.4e-102
Smith-Waterman score: 1836; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KB0 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 SAFEETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SAFEETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 RFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 YRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRS
190 200 210 220 230 240
250 260 270
pF1KB0 SSSKQRKELGGLEGDPSPEEDEGIQKASPLTHSPPDEL
::::::::::::::::::::::::::::::::::::::
NP_006 SSSKQRKELGGLEGDPSPEEDEGIQKASPLTHSPPDEL
250 260 270
>>NP_001305774 (OMIM: 610774) protein canopy homolog 3 i (189 aa)
initn: 1236 init1: 1236 opt: 1236 Z-score: 1318.2 bits: 251.2 E(85289): 1.1e-66
Smith-Waterman score: 1236; 98.9% identity (99.5% similar) in 188 aa overlap (91-278:2-189)
70 80 90 100 110 120
pF1KB0 SAFEETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSN
. ::::::::::::::::::::::::::::
NP_001 MRRDLRLIEVTETICKRLLDYSLHKERTGSN
10 20 30
130 140 150 160 170 180
pF1KB0 RFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDW
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB0 YRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRS
100 110 120 130 140 150
250 260 270
pF1KB0 SSSKQRKELGGLEGDPSPEEDEGIQKASPLTHSPPDEL
::::::::::::::::::::::::::::::::::::::
NP_001 SSSKQRKELGGLEGDPSPEEDEGIQKASPLTHSPPDEL
160 170 180
>>NP_001305771 (OMIM: 610774) protein canopy homolog 3 i (311 aa)
initn: 1822 init1: 1234 opt: 1234 Z-score: 1313.0 bits: 250.9 E(85289): 2.1e-66
Smith-Waterman score: 1753; 89.4% identity (89.4% similar) in 310 aa overlap (2-278:2-311)
10 20 30 40 50 60
pF1KB0 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
10 20 30 40 50 60
70 80 90
pF1KB0 SAFEETGKTKEVIGTGYGILDQKASGVKYTKS----------------------------
::::::::::::::::::::::::::::::::
NP_001 SAFEETGKTKEVIGTGYGILDQKASGVKYTKSISDPPDQMTYLPSSSESLPIGGELSSSS
70 80 90 100 110 120
100 110 120 130 140
pF1KB0 -----DLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMDI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCLGRDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMDI
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB0 PYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLCANHVLKGKDTSCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLCANHVLKGKDTSCL
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB0 AEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEGDPSPEEDEGIQKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEGDPSPEEDEGIQKA
250 260 270 280 290 300
270
pF1KB0 SPLTHSPPDEL
:::::::::::
NP_001 SPLTHSPPDEL
310
>>NP_001305777 (OMIM: 610774) protein canopy homolog 3 i (151 aa)
initn: 806 init1: 806 opt: 806 Z-score: 864.6 bits: 166.9 E(85289): 2e-41
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 124 aa overlap (1-124:1-124)
10 20 30 40 50 60
pF1KB0 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 SAFEETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAFEETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 RFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDW
::::
NP_001 RFAKVGFGIVLHPLWGQACMYLSVSAGVSVI
130 140 150
>>NP_689968 (OMIM: 610047) protein canopy homolog 4 prec (248 aa)
initn: 639 init1: 489 opt: 665 Z-score: 712.3 bits: 139.5 E(85289): 6.1e-33
Smith-Waterman score: 665; 44.9% identity (74.4% similar) in 227 aa overlap (17-238:6-231)
10 20 30 40 50 60
pF1KB0 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
: .::.:.: . : .. :..: :::::::::: ...::.
NP_689 MGPVRLGILLFLFLAVHEAWAGMLKEEDDDTERLPSKCEVCKLLSTELQ
10 20 30 40
70 80 90 100 110
pF1KB0 SAFEETGKTKEVIGTGYGILD--QKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTG
. . .::...::. : .:: .. : :. :. :: :. :..:.:.::::.: :: :
NP_689 AELSRTGRSREVLELGQ-VLDTGKRKRHVPYSVSETRLEEALENLCERILDYSVHAERKG
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB0 SNRFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIE
: :.:::.:.:. ::..::.::::: . :: :::.: :.::. :::::....::::...
NP_689 SLRYAKGQSQTMATLKGLVQKGVKVDLGIPLELWDEPSVEVTYLKKQCETMLEEFEDIVG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB0 DWYRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKK---GDTAALGGKKSKKKSSRAKA
::: .:::. : .::: .::: . .:.:: : :.::. :. . : ...... . .
NP_689 DWYFHHQEQPLQNFLCEGHVLPAAETACLQETWTGKEITDGEEKTEGEEEQEEEEEEEEE
170 180 190 200 210 220
240 250 260 270
pF1KB0 AGGRSSSSKQRKELGGLEGDPSPEEDEGIQKASPLTHSPPDEL
::
NP_689 EGGDKMTKTGSHPKLDREDL
230 240
>>NP_001305776 (OMIM: 610774) protein canopy homolog 3 i (116 aa)
initn: 602 init1: 602 opt: 602 Z-score: 650.3 bits: 126.9 E(85289): 1.7e-29
Smith-Waterman score: 602; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KB0 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 SAFEETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSN
::::::::::::::::::::::::::::::::
NP_001 SAFEETGKTKEVIGTGYGILDQKASGVKYTKSISDPPDQMTYLPSSSESLPIGTCG
70 80 90 100 110
130 140 150 160 170 180
pF1KB0 RFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDW
278 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:42:56 2016 done: Sat Nov 5 17:42:57 2016
Total Scan time: 8.260 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]