Result of FASTA (omim) for
pF1KB0995
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0995, 284 aa
1>>>pF1KB0995 284 - 284 aa - 284 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9245+/-0.000632; mu= -0.8044+/- 0.038
mean_var=377.0214+/-91.802, 0's: 0 Z-trim(114.3): 350 B-trim: 42 in 1/48
Lambda= 0.066053
statistics sampled from 23736 (24087) to 23736 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.282), width: 16
Scan time: 6.530
The best scores are: opt bits E(85289)
NP_001309395 (OMIM: 605126) four and a half LIM do ( 284) 2151 219.2 7.1e-57
NP_065228 (OMIM: 605126) four and a half LIM domai ( 284) 2151 219.2 7.1e-57
NP_001164278 (OMIM: 605126) four and a half LIM do ( 284) 2151 219.2 7.1e-57
NP_001309396 (OMIM: 605126) four and a half LIM do ( 284) 2151 219.2 7.1e-57
NP_001305823 (OMIM: 602633) four and a half LIM do ( 279) 1383 146.0 7.5e-35
NP_001034581 (OMIM: 602633) four and a half LIM do ( 279) 1383 146.0 7.5e-35
NP_963849 (OMIM: 602633) four and a half LIM domai ( 279) 1383 146.0 7.5e-35
XP_011509100 (OMIM: 602633) PREDICTED: four and a ( 279) 1383 146.0 7.5e-35
NP_001441 (OMIM: 602633) four and a half LIM domai ( 279) 1383 146.0 7.5e-35
NP_001305825 (OMIM: 602633) four and a half LIM do ( 279) 1383 146.0 7.5e-35
NP_963851 (OMIM: 602633) four and a half LIM domai ( 279) 1383 146.0 7.5e-35
NP_001305824 (OMIM: 602633) four and a half LIM do ( 279) 1383 146.0 7.5e-35
NP_004459 (OMIM: 602790) four and a half LIM domai ( 280) 1176 126.3 6.5e-29
NP_001153176 (OMIM: 300163,300695,300696,300717,30 ( 280) 1010 110.5 3.8e-24
NP_001161291 (OMIM: 300163,300695,300696,300717,30 ( 280) 1010 110.5 3.8e-24
XP_016884846 (OMIM: 300163,300695,300696,300717,30 ( 280) 1010 110.5 3.8e-24
XP_006724810 (OMIM: 300163,300695,300696,300717,30 ( 280) 1010 110.5 3.8e-24
NP_001153172 (OMIM: 300163,300695,300696,300717,30 ( 280) 1010 110.5 3.8e-24
NP_001440 (OMIM: 300163,300695,300696,300717,30071 ( 280) 1010 110.5 3.8e-24
NP_001153171 (OMIM: 300163,300695,300696,300717,30 ( 296) 1010 110.5 3.9e-24
NP_001153173 (OMIM: 300163,300695,300696,300717,30 ( 309) 1010 110.5 4e-24
XP_006724807 (OMIM: 300163,300695,300696,300717,30 ( 323) 868 97.0 4.9e-20
XP_006724808 (OMIM: 300163,300695,300696,300717,30 ( 323) 868 97.0 4.9e-20
NP_001153174 (OMIM: 300163,300695,300696,300717,30 ( 323) 868 97.0 4.9e-20
XP_006724809 (OMIM: 300163,300695,300696,300717,30 ( 323) 868 97.0 4.9e-20
XP_006724806 (OMIM: 300163,300695,300696,300717,30 ( 339) 868 97.0 5e-20
NP_001305828 (OMIM: 602633) four and a half LIM do ( 171) 833 93.3 3.4e-19
NP_001305827 (OMIM: 602633) four and a half LIM do ( 165) 793 89.5 4.6e-18
NP_001305826 (OMIM: 602633) four and a half LIM do ( 165) 793 89.5 4.6e-18
NP_001230807 (OMIM: 602790) four and a half LIM do ( 172) 743 84.7 1.3e-16
NP_001153175 (OMIM: 300163,300695,300696,300717,30 ( 194) 616 72.7 6.1e-13
NP_001317588 (OMIM: 300163,300695,300696,300717,30 ( 210) 616 72.8 6.4e-13
XP_016856164 (OMIM: 602790) PREDICTED: four and a ( 147) 473 58.9 6.6e-09
XP_005253974 (OMIM: 602505) PREDICTED: paxillin is ( 403) 449 57.2 5.8e-08
XP_016875232 (OMIM: 602505) PREDICTED: paxillin is ( 424) 449 57.3 6e-08
NP_079433 (OMIM: 602505) paxillin isoform 4 [Homo ( 424) 449 57.3 6e-08
NP_002850 (OMIM: 602505) paxillin isoform 1 [Homo ( 557) 449 57.4 7e-08
XP_016875231 (OMIM: 602505) PREDICTED: paxillin is ( 563) 449 57.4 7.1e-08
XP_016875230 (OMIM: 602505) PREDICTED: paxillin is ( 589) 449 57.4 7.3e-08
NP_001074324 (OMIM: 602505) paxillin isoform 2 [Ho ( 591) 449 57.4 7.3e-08
XP_016875229 (OMIM: 602505) PREDICTED: paxillin is ( 597) 449 57.5 7.3e-08
NP_001230685 (OMIM: 602505) paxillin isoform 3 [Ho ( 605) 449 57.5 7.4e-08
XP_016875228 (OMIM: 602505) PREDICTED: paxillin is ( 611) 449 57.5 7.4e-08
XP_016875227 (OMIM: 602505) PREDICTED: paxillin is ( 645) 449 57.5 7.7e-08
XP_016875226 (OMIM: 602505) PREDICTED: paxillin is ( 700) 449 57.6 8e-08
XP_016875225 (OMIM: 602505) PREDICTED: paxillin is ( 748) 449 57.6 8.4e-08
XP_016875224 (OMIM: 602505) PREDICTED: paxillin is ( 858) 449 57.7 9.1e-08
XP_016875223 (OMIM: 602505) PREDICTED: paxillin is ( 888) 449 57.7 9.2e-08
XP_016875222 (OMIM: 602505) PREDICTED: paxillin is ( 940) 449 57.7 9.6e-08
XP_011536925 (OMIM: 602505) PREDICTED: paxillin is ( 996) 449 57.8 9.9e-08
>>NP_001309395 (OMIM: 605126) four and a half LIM domain (284 aa)
initn: 2151 init1: 2151 opt: 2151 Z-score: 1142.1 bits: 219.2 E(85289): 7.1e-57
Smith-Waterman score: 2151; 99.6% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KB0 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCMDCYNHLYANKCVACSKPISGLTGAKFICF
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_001 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICF
190 200 210 220 230 240
250 260 270 280
pF1KB0 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
250 260 270 280
>>NP_065228 (OMIM: 605126) four and a half LIM domains p (284 aa)
initn: 2151 init1: 2151 opt: 2151 Z-score: 1142.1 bits: 219.2 E(85289): 7.1e-57
Smith-Waterman score: 2151; 99.6% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KB0 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCMDCYNHLYANKCVACSKPISGLTGAKFICF
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_065 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICF
190 200 210 220 230 240
250 260 270 280
pF1KB0 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
::::::::::::::::::::::::::::::::::::::::::::
NP_065 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
250 260 270 280
>>NP_001164278 (OMIM: 605126) four and a half LIM domain (284 aa)
initn: 2151 init1: 2151 opt: 2151 Z-score: 1142.1 bits: 219.2 E(85289): 7.1e-57
Smith-Waterman score: 2151; 99.6% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KB0 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCMDCYNHLYANKCVACSKPISGLTGAKFICF
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_001 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICF
190 200 210 220 230 240
250 260 270 280
pF1KB0 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
250 260 270 280
>>NP_001309396 (OMIM: 605126) four and a half LIM domain (284 aa)
initn: 2151 init1: 2151 opt: 2151 Z-score: 1142.1 bits: 219.2 E(85289): 7.1e-57
Smith-Waterman score: 2151; 99.6% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KB0 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCMDCYNHLYANKCVACSKPISGLTGAKFICF
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_001 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICF
190 200 210 220 230 240
250 260 270 280
pF1KB0 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
250 260 270 280
>>NP_001305823 (OMIM: 602633) four and a half LIM domain (279 aa)
initn: 1798 init1: 1346 opt: 1383 Z-score: 746.7 bits: 146.0 E(85289): 7.5e-35
Smith-Waterman score: 1383; 59.4% identity (85.3% similar) in 278 aa overlap (3-280:2-279)
10 20 30 40 50 60
pF1KB0 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
: .: :..:. ::.::::.:...:::::.:.. .:.: :::: ::: : ::: ::::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDR
10 20 30 40 50
70 80 90 100 110 120
pF1KB0 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
::::.::.:..: .:::.::::::...::::.::::: :::: .::.:::::.::::.::
NP_001 HWHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB0 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
. ::::::.:. :.:::::: .: :.. :.::::.::. : : ::: ::.::.:. .:
NP_001 SSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB0 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCMDCYNHLYANKCVACSKPISGLTGAKFICF
::::::.:..:::.: ..: .:::. .:..:. :::.::..:..::::: :.:.: :
NP_001 PWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISF
180 190 200 210 220 230
250 260 270 280
pF1KB0 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
.. :::..:::: :::.::::.::::. .:.: ::. .
NP_001 EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
240 250 260 270
>>NP_001034581 (OMIM: 602633) four and a half LIM domain (279 aa)
initn: 1798 init1: 1346 opt: 1383 Z-score: 746.7 bits: 146.0 E(85289): 7.5e-35
Smith-Waterman score: 1383; 59.4% identity (85.3% similar) in 278 aa overlap (3-280:2-279)
10 20 30 40 50 60
pF1KB0 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
: .: :..:. ::.::::.:...:::::.:.. .:.: :::: ::: : ::: ::::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDR
10 20 30 40 50
70 80 90 100 110 120
pF1KB0 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
::::.::.:..: .:::.::::::...::::.::::: :::: .::.:::::.::::.::
NP_001 HWHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB0 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
. ::::::.:. :.:::::: .: :.. :.::::.::. : : ::: ::.::.:. .:
NP_001 SSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB0 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCMDCYNHLYANKCVACSKPISGLTGAKFICF
::::::.:..:::.: ..: .:::. .:..:. :::.::..:..::::: :.:.: :
NP_001 PWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISF
180 190 200 210 220 230
250 260 270 280
pF1KB0 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
.. :::..:::: :::.::::.::::. .:.: ::. .
NP_001 EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
240 250 260 270
>>NP_963849 (OMIM: 602633) four and a half LIM domains p (279 aa)
initn: 1798 init1: 1346 opt: 1383 Z-score: 746.7 bits: 146.0 E(85289): 7.5e-35
Smith-Waterman score: 1383; 59.4% identity (85.3% similar) in 278 aa overlap (3-280:2-279)
10 20 30 40 50 60
pF1KB0 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
: .: :..:. ::.::::.:...:::::.:.. .:.: :::: ::: : ::: ::::
NP_963 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDR
10 20 30 40 50
70 80 90 100 110 120
pF1KB0 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
::::.::.:..: .:::.::::::...::::.::::: :::: .::.:::::.::::.::
NP_963 HWHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB0 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
. ::::::.:. :.:::::: .: :.. :.::::.::. : : ::: ::.::.:. .:
NP_963 SSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB0 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCMDCYNHLYANKCVACSKPISGLTGAKFICF
::::::.:..:::.: ..: .:::. .:..:. :::.::..:..::::: :.:.: :
NP_963 PWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISF
180 190 200 210 220 230
250 260 270 280
pF1KB0 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
.. :::..:::: :::.::::.::::. .:.: ::. .
NP_963 EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
240 250 260 270
>>XP_011509100 (OMIM: 602633) PREDICTED: four and a half (279 aa)
initn: 1798 init1: 1346 opt: 1383 Z-score: 746.7 bits: 146.0 E(85289): 7.5e-35
Smith-Waterman score: 1383; 59.4% identity (85.3% similar) in 278 aa overlap (3-280:2-279)
10 20 30 40 50 60
pF1KB0 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
: .: :..:. ::.::::.:...:::::.:.. .:.: :::: ::: : ::: ::::
XP_011 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDR
10 20 30 40 50
70 80 90 100 110 120
pF1KB0 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
::::.::.:..: .:::.::::::...::::.::::: :::: .::.:::::.::::.::
XP_011 HWHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB0 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
. ::::::.:. :.:::::: .: :.. :.::::.::. : : ::: ::.::.:. .:
XP_011 SSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB0 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCMDCYNHLYANKCVACSKPISGLTGAKFICF
::::::.:..:::.: ..: .:::. .:..:. :::.::..:..::::: :.:.: :
XP_011 PWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISF
180 190 200 210 220 230
250 260 270 280
pF1KB0 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
.. :::..:::: :::.::::.::::. .:.: ::. .
XP_011 EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
240 250 260 270
>>NP_001441 (OMIM: 602633) four and a half LIM domains p (279 aa)
initn: 1798 init1: 1346 opt: 1383 Z-score: 746.7 bits: 146.0 E(85289): 7.5e-35
Smith-Waterman score: 1383; 59.4% identity (85.3% similar) in 278 aa overlap (3-280:2-279)
10 20 30 40 50 60
pF1KB0 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
: .: :..:. ::.::::.:...:::::.:.. .:.: :::: ::: : ::: ::::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDR
10 20 30 40 50
70 80 90 100 110 120
pF1KB0 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
::::.::.:..: .:::.::::::...::::.::::: :::: .::.:::::.::::.::
NP_001 HWHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB0 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
. ::::::.:. :.:::::: .: :.. :.::::.::. : : ::: ::.::.:. .:
NP_001 SSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB0 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCMDCYNHLYANKCVACSKPISGLTGAKFICF
::::::.:..:::.: ..: .:::. .:..:. :::.::..:..::::: :.:.: :
NP_001 PWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISF
180 190 200 210 220 230
250 260 270 280
pF1KB0 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
.. :::..:::: :::.::::.::::. .:.: ::. .
NP_001 EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
240 250 260 270
>>NP_001305825 (OMIM: 602633) four and a half LIM domain (279 aa)
initn: 1798 init1: 1346 opt: 1383 Z-score: 746.7 bits: 146.0 E(85289): 7.5e-35
Smith-Waterman score: 1383; 59.4% identity (85.3% similar) in 278 aa overlap (3-280:2-279)
10 20 30 40 50 60
pF1KB0 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
: .: :..:. ::.::::.:...:::::.:.. .:.: :::: ::: : ::: ::::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDR
10 20 30 40 50
70 80 90 100 110 120
pF1KB0 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
::::.::.:..: .:::.::::::...::::.::::: :::: .::.:::::.::::.::
NP_001 HWHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB0 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
. ::::::.:. :.:::::: .: :.. :.::::.::. : : ::: ::.::.:. .:
NP_001 SSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB0 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCMDCYNHLYANKCVACSKPISGLTGAKFICF
::::::.:..:::.: ..: .:::. .:..:. :::.::..:..::::: :.:.: :
NP_001 PWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISF
180 190 200 210 220 230
250 260 270 280
pF1KB0 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
.. :::..:::: :::.::::.::::. .:.: ::. .
NP_001 EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
240 250 260 270
284 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:44:07 2016 done: Sat Nov 5 17:44:08 2016
Total Scan time: 6.530 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]