FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0997, 273 aa
  1>>>pF1KB0997 273 - 273 aa - 273 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4658+/-0.000618; mu= 16.1577+/- 0.038
 mean_var=93.0442+/-18.068, 0's: 0 Z-trim(114.9): 2  B-trim: 0 in 0/51
 Lambda= 0.132963
 statistics sampled from 15451 (15453) to 15451 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.475), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS11052.1 CXCL16 gene_id:58191|Hs108|chr17       ( 273) 1841 362.3 2.2e-100


>>CCDS11052.1 CXCL16 gene_id:58191|Hs108|chr17            (273 aa)
 initn: 1841 init1: 1841 opt: 1841  Z-score: 1915.8  bits: 362.3 E(32554): 2.2e-100
Smith-Waterman score: 1841; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)

               10        20        30        40        50        60
pF1KB0 MSGSQSEVAPSPQSPRSPEMGRDLRPGSRVLLLLLLLLLVYLTQPGNGNEGSVTGSCYCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSGSQSEVAPSPQSPRSPEMGRDLRPGSRVLLLLLLLLLVYLTQPGNGNEGSVTGSCYCG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 KRISSDSPPSVQFMNRLRKHLRAYHRCLYYTRFQLLSWSVCGGNKDPWVQELMSCLDLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KRISSDSPPSVQFMNRLRKHLRAYHRCLYYTRFQLLSWSVCGGNKDPWVQELMSCLDLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 CGHAYSGIVAHQKHLLPTSPPISQASEGASSDIHTPAQMLLSTLQSTQRPTLPVGSLSSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CGHAYSGIVAHQKHLLPTSPPISQASEGASSDIHTPAQMLLSTLQSTQRPTLPVGSLSSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 KELTRPNETTIHTAGHSLAAGPEAGENQKQPEKNAGPTARTSATVPVLCLLAIIFILTAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KELTRPNETTIHTAGHSLAAGPEAGENQKQPEKNAGPTARTSATVPVLCLLAIIFILTAA
              190       200       210       220       230       240

              250       260       270   
pF1KB0 LSYVLCKRRRGQSPQSSPDLPVHYIPVAPDSNT
       :::::::::::::::::::::::::::::::::
CCDS11 LSYVLCKRRRGQSPQSSPDLPVHYIPVAPDSNT
              250       260       270   




273 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:24:20 2016 done: Fri Nov  4 20:24:21 2016
 Total Scan time:  2.930 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]