Result of FASTA (ccds) for
pF1KB1891
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB1891, 1463 aa
1>>>pF1KB1891 1463 - 1463 aa - 1463 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.1952+/-0.0012; mu= 0.7621+/- 0.074
mean_var=425.2071+/-86.657, 0's: 0 Z-trim(113.3): 64 B-trim: 0 in 0/53
Lambda= 0.062198
statistics sampled from 13886 (13936) to 13886 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.428), width: 16
Scan time: 6.140
The best scores are: opt bits E(32554)
CCDS8748.2 SCAF11 gene_id:9169|Hs108|chr12 (1463) 9770 892.4 0
>>CCDS8748.2 SCAF11 gene_id:9169|Hs108|chr12 (1463 aa)
initn: 9770 init1: 9770 opt: 9770 Z-score: 4754.7 bits: 892.4 E(32554): 0
Smith-Waterman score: 9770; 99.9% identity (99.9% similar) in 1463 aa overlap (1-1463:1-1463)
10 20 30 40 50 60
pF1KB1 MKKKTVCTLNMGDKKYEDMEGEENGDNTISTGLLYSEADRCPICLNCLLEKEVGFPESCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MKKKTVCTLNMGDKKYEDMEGEENGDNTISTGLLYSEADRCPICLNCLLEKEVGFPESCN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB1 HVFCMTCILKWAETLASCPIDRKPFQAVFKFSALEGYVKVQVKKQLRETKDKKNENSFEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 HVFCMTCILKWAETLASCPIDRKPFQAVFKFSALEGYVKVQVKKQLRETKDKKNENSFEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB1 QVSCHENSKSCIRRKAIVREDLLSAKVCDLKWIHRNSLYSETGGKKNAAIKINKPQRSNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 QVSCHENSKSCIRRKAIVREDLLSAKVCDLKWIHRNSLYSETGGKKNAAIKINKPQRSNW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB1 STNQCFRNFFSNMFSSVSHSGESSFTYRAYCTEFIEASEISALIRQKRHELELSWFPDTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 STNQCFRNFFSNMFSSVSHSGESSFTYRAYCTEFIEASEISALIRQKRHELELSWFPDTL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB1 PGIGRIGFIPWNVETEVLPLISSVLPRTIFPTSTISFEHFGTSCKGYALAHTQEGEEKKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 PGIGRIGFIPWNVETEVLPLISSVLPRTIFPTSTISFEHFGTSCKGYALAHTQEGEEKKQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB1 TSGTSNTRGSRRKPAMTTPTRRSTRNTRAETASQSQRSPISDNSGCDAPGNSNPSLSVPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 TSGTSNTRGSRRKPAMTTPTRRSTRNTRAETASQSQRSPISDNSGCDAPGNSNPSLSVPS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB1 SAESEKQTRQAPKRKSVRRGRKPPLLKKKLRSSVAAPEKSSSNDSVDEETAESDTSPVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 SAESEKQTRQAPKRKSVRRGRKPPLLKKKLRSSVAAPEKSSSNDSVDEETAESDTSPVLE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB1 KEHQPDVDSSNICTVQTHVENQSANCLKSCNEQIEESEKHTANYDTEERVGSSSSESCAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 KEHQPDVDSSNICTVQTHVENQSANCLKSCNEQIEESEKHTANYDTEERVGSSSSESCAQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB1 DLPVLVGEEGEVKKLENTGIEANVLCLESEISENILEKGGDPLEKQDQISGLSQSEVKTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 DLPVLVGEEGEVKKLENTGIEANVLCLESEISENILEKGGDPLEKQDQISGLSQSEVKTD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB1 VCTVHLPNDFPTCLTSESKVYQPVSCPLSDLSENVESVVNEEKITESSLVEITEHKDFTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 VCTVHLPNDFPTCLTSESKVYQPVSCPLSDLSENVESVVNEEKITESSLVEITEHKDFTL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB1 KTEELIESPKLESSEGEIIQTVDRQSVKSPEVQLLGHVETEDVEIIATCDTFGNEDYNNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS87 KTEELIESPKLESSEGEIIQTVDRQSVKSPEVQLLGHVETEDVEIIATCDTFGNEDFNNI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB1 QDSENNLLKNNLLNTKLEKSLEEKNESLTEHPRSTELPKTHIEQIQKHFSEDNNEMIPME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 QDSENNLLKNNLLNTKLEKSLEEKNESLTEHPRSTELPKTHIEQIQKHFSEDNNEMIPME
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB1 CDSFCSDQNESEVEPSVNADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 CDSFCSDQNESEVEPSVNADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB1 IDKTKKPRTRRSRFHSPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPKNESA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 IDKTKKPRTRRSRFHSPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPKNESA
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB1 RGRKKSRSQSPKKDIARERRQSQSRSPKRYTTRESRRSESLSPRRETSRENKRSQPRVKD
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS87 RGRKKSRSQSPKKDIARERRQSQSRSPKRDTTRESRRSESLSPRRETSRENKRSQPRVKD
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB1 SSPGEKSRSQSRERESDRDGQRRERERRTRKWSRSRSHSRSPSRCRTKSKSSSFGRIDRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 SSPGEKSRSQSRERESDRDGQRRERERRTRKWSRSRSHSRSPSRCRTKSKSSSFGRIDRD
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB1 SYSPRWKGRWANDGWRCPRGNDRYRKNDPEKQNENTRKEKNDIHLDADDPNSADKHRNDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 SYSPRWKGRWANDGWRCPRGNDRYRKNDPEKQNENTRKEKNDIHLDADDPNSADKHRNDC
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB1 PNWITEKINSGPDPRTRNPEKLKESHWEENRNENSGNSWNKNFGSGWVSNRGRGRGNRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 PNWITEKINSGPDPRTRNPEKLKESHWEENRNENSGNSWNKNFGSGWVSNRGRGRGNRGR
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB1 GTYRSSFAYKDQNENRWQNRKPLSGNSNSSGSESFKFVEQQSYKRKSEQEFSFDTPADRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 GTYRSSFAYKDQNENRWQNRKPLSGNSNSSGSESFKFVEQQSYKRKSEQEFSFDTPADRS
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB1 GWTSASSWAVRKTLPADVQNYYSRRGRNSSGPQSGWMKQEEETSGQDSSLKDQTNQQVDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 GWTSASSWAVRKTLPADVQNYYSRRGRNSSGPQSGWMKQEEETSGQDSSLKDQTNQQVDG
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB1 SQLPINMMQPQMNVMQQQMNAQHQPMNIFPYPVGVHAPLMNIQRNPFNIHPQLPLHLHTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 SQLPINMMQPQMNVMQQQMNAQHQPMNIFPYPVGVHAPLMNIQRNPFNIHPQLPLHLHTG
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KB1 VPLMQVATPTSVSQGLPPPPPPPPPSQQVNYIASQPDGKQLQGIPSSSHVSNNMSTPVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 VPLMQVATPTSVSQGLPPPPPPPPPSQQVNYIASQPDGKQLQGIPSSSHVSNNMSTPVLP
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KB1 APTAAPGNTGMVQGPSSGNTSSSSHSKASNAAVKLAESKVSVAVEASADSSKTDKKLQIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 APTAAPGNTGMVQGPSSGNTSSSSHSKASNAAVKLAESKVSVAVEASADSSKTDKKLQIQ
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KB1 EKAAQEVKLAIKPFYQNKDITKEEYKEIVRKAVDKVCHSKSGEVNSTKVANLVKAYVDKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 EKAAQEVKLAIKPFYQNKDITKEEYKEIVRKAVDKVCHSKSGEVNSTKVANLVKAYVDKY
1390 1400 1410 1420 1430 1440
1450 1460
pF1KB1 KYSRKGSQKKTLEEPVSTEKNIG
:::::::::::::::::::::::
CCDS87 KYSRKGSQKKTLEEPVSTEKNIG
1450 1460
1463 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:05:57 2016 done: Fri Nov 4 02:05:58 2016
Total Scan time: 6.140 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]