FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB2389, 1058 aa
  1>>>pF1KB2389 1058 - 1058 aa - 1058 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9682+/-0.000976; mu= 17.7457+/- 0.059
 mean_var=66.2451+/-13.059, 0's: 0 Z-trim(103.8): 22  B-trim: 0 in 0/49
 Lambda= 0.157579
 statistics sampled from 7594 (7596) to 7594 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.59), E-opt: 0.2 (0.233), width:  16
 Scan time:  4.150

The best scores are:                                      opt bits E(32554)
CCDS45559.1 GEMIN4 gene_id:50628|Hs108|chr17       (1058) 7047 1611.6       0


>>CCDS45559.1 GEMIN4 gene_id:50628|Hs108|chr17            (1058 aa)
 initn: 7047 init1: 7047 opt: 7047  Z-score: 8646.7  bits: 1611.6 E(32554):    0
Smith-Waterman score: 7047; 99.7% identity (99.9% similar) in 1058 aa overlap (1-1058:1-1058)

               10        20        30        40        50        60
pF1KB2 MDLGPLNICEEMTILHGGFLLAEQLFHPKALAELTKSDWERVGRPIVEALREISSAAAHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MDLGPLNICEEMTILHGGFLLAEQLFHPKALAELTKSDWERVGRPIVEALREISSAAAHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB2 QPFAWKKKALIIIWAKVLQPHPVTPSDTETRWQEDLFFSVGNMIPTINHTILFELLKSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QPFAWKKKALIIIWAKVLQPHPVTPSDTETRWQEDLFFSVGNMIPTINHTILFELLKSLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB2 ASGLFIQLLMALPTTICHAELERFLEHVTVDTSAEDVAFFLDVWWEVMKHKGHPQDPLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ASGLFIQLLMALPTTICHAELERFLEHVTVDTSAEDVAFFLDVWWEVMKHKGHPQDPLLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB2 QFSAMAHKYLPALDEFPHPPKRLRSDPDACPTMPLLAMLLRGLTQIQSRILGPGRKCCAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QFSAMAHKYLPALDEFPHPPKRLRSDPDACPTMPLLAMLLRGLTQIQSRILGPGRKCCAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB2 ANLADMLTVFALTEDDPQEVSATVYLDKLATVISVWNSDTQNPYHQQALAEKVKEAERDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ANLADMLTVFALTEDDPQEVSATVYLDKLATVISVWNSDTQNPYHQQALAEKVKEAERDV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB2 SLTSLAKLPSETIFVGCEFLHHLLREWGEELQAVLRSSQGTSYDSYRLCDSLTSFSQNAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SLTSLAKLPSETIFVGCEFLHHLLREWGEELQAVLRSSQGTSYDSYRLCDSLTSFSQNAT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB2 LYLNRTSLSKEDRQVVSELAECVRDFLRKTSTVLKNRALEDITASIAMAVIQQKMDRHME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LYLNRTSLSKEDRQVVSELAECVRDFLRKTSTVLKNRALEDITASIAMAVIQQKMDRHME
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB2 VCYIFASEKKWAFSDEWVACLGSNRALFREPDLVLRLLETVIDVSTADRAIPESQIRQVI
       :::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
CCDS45 VCYIFASEKKWAFSDEWVACLGSNRALFRQPDLVLRLLETVIDVSTADRAIPESQIRQVI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB2 HLILECYADLSLPGKNKVLAGILRSWGRKGLSEKLLAYVEGFQEDLNTTFNQLTQSASEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HLILECYADLSLPGKNKVLAGILRSWGRKGLSEKLLAYVEGFQEDLNTTFNQLTQSASEQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB2 GLAKAVASVARLVIVHPEVTVKKMCSLAVVNLGTHKFLAQILTAFPALRFVEVQGPNSSA
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS45 GLAKAVASVARLVIVHPEVTVKKMCSLAVVNLGTHKFLAQILTAFPALRFVEEQGPNSSA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB2 TFMVSCLKETVWMKFSTPKEEKQFLELLNCLMSPVKPQGIPVAALLEPDEVLKEFVLPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TFMVSCLKETVWMKFSTPKEEKQFLELLNCLMSPVKPQGIPVAALLEPDEVLKEFVLPFL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB2 RLDVEEVDLSLRIFIQTLEANACREEYWLQTCSPFPLLFSLCQLLDRFSKYWQLPKEKRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RLDVEEVDLSLRIFIQTLEANACREEYWLQTCSPFPLLFSLCQLLDRFSKYWQLPKEKRC
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB2 LSLDRKDLAIHILELLCEIVSANAETFSPDVWIKSLSWLHRKLEQLDWTVGLRLKSFFEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LSLDRKDLAIHILELLCEIVSANAETFSPDVWIKSLSWLHRKLEQLDWTVGLRLKSFFEG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB2 HFKCEVPATLFEICKLSEDEWTSQAHPGYGAGTGLLAWMECCCVSSGISERMLSLLVVDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HFKCEVPATLFEICKLSEDEWTSQAHPGYGAGTGLLAWMECCCVSSGISERMLSLLVVDV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB2 GNPEEVRLFSKGFLVALVQVMPWCSPQEWQRLHQLTRRLLEKQLLHVPYSLEYIQFVPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GNPEEVRLFSKGFLVALVQVMPWCSPQEWQRLHQLTRRLLEKQLLHVPYSLEYIQFVPLL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB2 NLKPFAQELQLSVLFLRTFQFLCSHSCRNWLPLEGWNHVVKLLCGSLTRLLDSVRAIQAA
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS45 NLKPFAQELQLSVLFLRTFQFLCSHSCRDWLPLEGWNHVVKLLCGSLTRLLDSVRAIQAA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB2 GPWVQGPEQDLTQEALFVYTQVFCHALHIMAMLHPEVCEPLYVLALETLTCYETLSKTNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GPWVQGPEQDLTQEALFVYTQVFCHALHIMAMLHPEVCEPLYVLALETLTCYETLSKTNP
              970       980       990      1000      1010      1020

             1030      1040      1050        
pF1KB2 SVSSLLQRAHEQRFLKSIAEGIGPEERRQTLLQKMSSF
       ::::::::::::::::::::::::::::::::::::::
CCDS45 SVSSLLQRAHEQRFLKSIAEGIGPEERRQTLLQKMSSF
             1030      1040      1050        




1058 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:00:58 2016 done: Thu Nov  3 12:00:59 2016
 Total Scan time:  4.150 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]