FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3003, 633 aa
  1>>>pF1KB3003 633 - 633 aa - 633 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.0462+/-0.00037; mu= -5.8938+/- 0.023
 mean_var=304.4332+/-61.277, 0's: 0 Z-trim(122.7): 1  B-trim: 78 in 1/59
 Lambda= 0.073507
 statistics sampled from 41230 (41232) to 41230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.483), width:  16
 Scan time: 11.860

The best scores are:                                      opt bits E(85289)
NP_006288 (OMIM: 194360) DNA repair protein XRCC1  ( 633) 4262 465.5 2.5e-130


>>NP_006288 (OMIM: 194360) DNA repair protein XRCC1 [Hom  (633 aa)
 initn: 4262 init1: 4262 opt: 4262  Z-score: 2460.9  bits: 465.5 E(85289): 2.5e-130
Smith-Waterman score: 4262; 100.0% identity (100.0% similar) in 633 aa overlap (1-633:1-633)

               10        20        30        40        50        60
pF1KB3 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 GNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 AEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVKEEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVKEEDE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SANSLRPGALFFSRINKTSPVTASDPAGPSYAAATLQASSAASSASPVSRAIGSTSKPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SANSLRPGALFFSRINKTSPVTASDPAGPSYAAATLQASSAASSASPVSRAIGSTSKPQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 SPKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPKLPAPTRTPATAPVPARAQGAVTGKPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SPKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPKLPAPTRTPATAPVPARAQGAVTGKPR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 GEGTEPRRPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GEGTEPRRPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 ICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSQRYLMAGPGSSSEEDEASHSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSQRYLMAGPGSSSEEDEASHSGG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 SGDEAPKLPQKQPQTKTKPTQAAGPSSPQKPPTPEETKAASPVLQEDIDIEGVQSEGQDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SGDEAPKLPQKQPQTKTKPTQAAGPSSPQKPPTPEETKAASPVLQEDIDIEGVQSEGQDN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 GAEDSGDTEDELRRVAEQKEHRLPPGQEENGEDPYAGSTDENTDSEEHQEPPDLPVPELP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GAEDSGDTEDELRRVAEQKEHRLPPGQEENGEDPYAGSTDENTDSEEHQEPPDLPVPELP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 DFFQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DFFQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMD
              550       560       570       580       590       600

              610       620       630   
pF1KB3 NPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQA
       :::::::::::::::::::::::::::::::::
NP_006 NPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQA
              610       620       630   




633 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:03:37 2016 done: Thu Nov  3 12:03:38 2016
 Total Scan time: 11.860 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]