Result of FASTA (ccds) for
pF1KB3029
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3029, 677 aa
1>>>pF1KB3029 677 - 677 aa - 677 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4983+/-0.000863; mu= 10.8845+/- 0.052
mean_var=131.8920+/-26.252, 0's: 0 Z-trim(111.3): 14 B-trim: 195 in 1/50
Lambda= 0.111677
statistics sampled from 12271 (12280) to 12271 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.377), width: 16
Scan time: 4.420
The best scores are: opt bits E(32554)
CCDS10001.1 BRF1 gene_id:2972|Hs108|chr14 ( 677) 4466 731.0 1.4e-210
CCDS55952.1 BRF1 gene_id:2972|Hs108|chr14 ( 650) 3883 637.0 2.5e-182
CCDS55950.1 BRF1 gene_id:2972|Hs108|chr14 ( 562) 3683 604.8 1.1e-172
CCDS42001.1 BRF1 gene_id:2972|Hs108|chr14 ( 473) 3088 508.9 6.9e-144
CCDS55949.1 BRF1 gene_id:2972|Hs108|chr14 ( 439) 2857 471.6 1e-132
CCDS55951.1 BRF1 gene_id:2972|Hs108|chr14 ( 584) 2275 377.9 2.2e-104
CCDS55953.1 BRF1 gene_id:2972|Hs108|chr14 ( 208) 1069 183.4 2.9e-46
>>CCDS10001.1 BRF1 gene_id:2972|Hs108|chr14 (677 aa)
initn: 4466 init1: 4466 opt: 4466 Z-score: 3894.3 bits: 731.0 E(32554): 1.4e-210
Smith-Waterman score: 4466; 100.0% identity (100.0% similar) in 677 aa overlap (1-677:1-677)
10 20 30 40 50 60
pF1KB3 MTGRVCRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MTGRVCRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DGAGKTPTLGGGFHVNLGKESRAQTLQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMAVSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DGAGKTPTLGGGFHVNLGKESRAQTLQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMAVSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 HLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 DFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 LRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSLC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 GEEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GEEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAAS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 LGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 YLREQREKEARIAKEKELGIYKEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YLREQREKEARIAKEKELGIYKEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 SVLRGLSSAGGGSPHREDAQPEHSASARKLSRRRTPASRSGADPVTSVGKRLRPLVSTQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SVLRGLSSAGGGSPHREDAQPEHSASARKLSRRRTPASRSGADPVTSVGKRLRPLVSTQP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 AKKVATGEALLPSSPTLGAEPARPQAVLVESGPVSYHADEEADEEEPDEEDGEPCVSALQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AKKVATGEALLPSSPTLGAEPARPQAVLVESGPVSYHADEEADEEEPDEEDGEPCVSALQ
610 620 630 640 650 660
670
pF1KB3 MMGSNDYGCDGDEDDGY
:::::::::::::::::
CCDS10 MMGSNDYGCDGDEDDGY
670
>>CCDS55952.1 BRF1 gene_id:2972|Hs108|chr14 (650 aa)
initn: 3883 init1: 3883 opt: 3883 Z-score: 3386.9 bits: 637.0 E(32554): 2.5e-182
Smith-Waterman score: 4223; 96.0% identity (96.0% similar) in 677 aa overlap (1-677:1-650)
10 20 30 40 50 60
pF1KB3 MTGRVCRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MTGRVCRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DGAGKTPTLGGGFHVNLGKESRAQTLQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMAVSR
:: :::::::::::::::::::::::::::::::
CCDS55 DG---------------------------RRHIHHLGNQLQLNQHCLDTAFNFFKMAVSR
70 80 90
130 140 150 160 170 180
pF1KB3 HLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB3 IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB3 DFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRK
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB3 LRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSLC
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB3 GEEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GEEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAAS
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB3 LGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAE
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB3 YLREQREKEARIAKEKELGIYKEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YLREQREKEARIAKEKELGIYKEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINY
460 470 480 490 500 510
550 560 570 580 590 600
pF1KB3 SVLRGLSSAGGGSPHREDAQPEHSASARKLSRRRTPASRSGADPVTSVGKRLRPLVSTQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SVLRGLSSAGGGSPHREDAQPEHSASARKLSRRRTPASRSGADPVTSVGKRLRPLVSTQP
520 530 540 550 560 570
610 620 630 640 650 660
pF1KB3 AKKVATGEALLPSSPTLGAEPARPQAVLVESGPVSYHADEEADEEEPDEEDGEPCVSALQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AKKVATGEALLPSSPTLGAEPARPQAVLVESGPVSYHADEEADEEEPDEEDGEPCVSALQ
580 590 600 610 620 630
670
pF1KB3 MMGSNDYGCDGDEDDGY
:::::::::::::::::
CCDS55 MMGSNDYGCDGDEDDGY
640 650
>>CCDS55950.1 BRF1 gene_id:2972|Hs108|chr14 (562 aa)
initn: 3683 init1: 3683 opt: 3683 Z-score: 3213.7 bits: 604.8 E(32554): 1.1e-172
Smith-Waterman score: 3683; 100.0% identity (100.0% similar) in 562 aa overlap (116-677:1-562)
90 100 110 120 130 140
pF1KB3 LQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGT
::::::::::::::::::::::::::::::
CCDS55 MAVSRHLTRGRKMAHVIAACLYLVCRTEGT
10 20 30
150 160 170 180 190 200
pF1KB3 PHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSM
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB3 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB3 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB3 DAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCGEEDTEDEELEAAASHLNKDLYREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCGEEDTEDEELEAAASHLNKDLYREL
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB3 LGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDG
280 290 300 310 320 330
450 460 470 480 490 500
pF1KB3 ELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEKELGIYKEHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEKELGIYKEHK
340 350 360 370 380 390
510 520 530 540 550 560
pF1KB3 PKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGLSSAGGGSPHREDAQPEHSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGLSSAGGGSPHREDAQPEHSA
400 410 420 430 440 450
570 580 590 600 610 620
pF1KB3 SARKLSRRRTPASRSGADPVTSVGKRLRPLVSTQPAKKVATGEALLPSSPTLGAEPARPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SARKLSRRRTPASRSGADPVTSVGKRLRPLVSTQPAKKVATGEALLPSSPTLGAEPARPQ
460 470 480 490 500 510
630 640 650 660 670
pF1KB3 AVLVESGPVSYHADEEADEEEPDEEDGEPCVSALQMMGSNDYGCDGDEDDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AVLVESGPVSYHADEEADEEEPDEEDGEPCVSALQMMGSNDYGCDGDEDDGY
520 530 540 550 560
>>CCDS42001.1 BRF1 gene_id:2972|Hs108|chr14 (473 aa)
initn: 3088 init1: 3088 opt: 3088 Z-score: 2696.8 bits: 508.9 E(32554): 6.9e-144
Smith-Waterman score: 3088; 100.0% identity (100.0% similar) in 473 aa overlap (205-677:1-473)
180 190 200 210 220 230
pF1KB3 CINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALL
::::::::::::::::::::::::::::::
CCDS42 MTALRLLQRMKRDWMHTGRRPSGLCGAALL
10 20 30
240 250 260 270 280 290
pF1KB3 VAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSY
40 50 60 70 80 90
300 310 320 330 340 350
pF1KB3 TAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTED
100 110 120 130 140 150
360 370 380 390 400 410
pF1KB3 TASSLCGEEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TASSLCGEEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLDP
160 170 180 190 200 210
420 430 440 450 460 470
pF1KB3 LPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELW
220 230 240 250 260 270
480 490 500 510 520 530
pF1KB3 MRENAEYLREQREKEARIAKEKELGIYKEHKPKKSCKRREPIQASTAREAIEKMLEQKKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MRENAEYLREQREKEARIAKEKELGIYKEHKPKKSCKRREPIQASTAREAIEKMLEQKKI
280 290 300 310 320 330
540 550 560 570 580 590
pF1KB3 SSKINYSVLRGLSSAGGGSPHREDAQPEHSASARKLSRRRTPASRSGADPVTSVGKRLRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SSKINYSVLRGLSSAGGGSPHREDAQPEHSASARKLSRRRTPASRSGADPVTSVGKRLRP
340 350 360 370 380 390
600 610 620 630 640 650
pF1KB3 LVSTQPAKKVATGEALLPSSPTLGAEPARPQAVLVESGPVSYHADEEADEEEPDEEDGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LVSTQPAKKVATGEALLPSSPTLGAEPARPQAVLVESGPVSYHADEEADEEEPDEEDGEP
400 410 420 430 440 450
660 670
pF1KB3 CVSALQMMGSNDYGCDGDEDDGY
:::::::::::::::::::::::
CCDS42 CVSALQMMGSNDYGCDGDEDDGY
460 470
>>CCDS55949.1 BRF1 gene_id:2972|Hs108|chr14 (439 aa)
initn: 2857 init1: 2857 opt: 2857 Z-score: 2496.1 bits: 471.6 E(32554): 1e-132
Smith-Waterman score: 2857; 100.0% identity (100.0% similar) in 439 aa overlap (239-677:1-439)
210 220 230 240 250 260
pF1KB3 RLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFE
::::::::::::::::::::::::::::::
CCDS55 MHDFRRTVKEVISVVKVCESTLRKRLTEFE
10 20 30
270 280 290 300 310 320
pF1KB3 DTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAI
40 50 60 70 80 90
330 340 350 360 370 380
pF1KB3 EIELENSRPKAKGGLASLAKDGSTEDTASSLCGEEDTEDEELEAAASHLNKDLYRELLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EIELENSRPKAKGGLASLAKDGSTEDTASSLCGEEDTEDEELEAAASHLNKDLYRELLGG
100 110 120 130 140 150
390 400 410 420 430 440
pF1KB3 APGSSEAAGSPEWGGRPPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDGELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 APGSSEAAGSPEWGGRPPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDGELD
160 170 180 190 200 210
450 460 470 480 490 500
pF1KB3 LSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEKELGIYKEHKPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEKELGIYKEHKPKK
220 230 240 250 260 270
510 520 530 540 550 560
pF1KB3 SCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGLSSAGGGSPHREDAQPEHSASAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGLSSAGGGSPHREDAQPEHSASAR
280 290 300 310 320 330
570 580 590 600 610 620
pF1KB3 KLSRRRTPASRSGADPVTSVGKRLRPLVSTQPAKKVATGEALLPSSPTLGAEPARPQAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KLSRRRTPASRSGADPVTSVGKRLRPLVSTQPAKKVATGEALLPSSPTLGAEPARPQAVL
340 350 360 370 380 390
630 640 650 660 670
pF1KB3 VESGPVSYHADEEADEEEPDEEDGEPCVSALQMMGSNDYGCDGDEDDGY
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VESGPVSYHADEEADEEEPDEEDGEPCVSALQMMGSNDYGCDGDEDDGY
400 410 420 430
>>CCDS55951.1 BRF1 gene_id:2972|Hs108|chr14 (584 aa)
initn: 2281 init1: 2254 opt: 2275 Z-score: 1987.5 bits: 377.9 E(32554): 2.2e-104
Smith-Waterman score: 3629; 96.2% identity (96.2% similar) in 584 aa overlap (116-677:1-584)
90 100 110 120 130 140
pF1KB3 LQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGT
::::::::::::::::::::::::::::::
CCDS55 MAVSRHLTRGRKMAHVIAACLYLVCRTEGT
10 20 30
150 160 170 180 190 200
pF1KB3 PHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSM
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB3 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB3 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB3 DAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCGEEDTEDEELEAAASHLNKDLYREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCGEEDTEDEELEAAASHLNKDLYREL
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB3 LGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDG
280 290 300 310 320 330
450 460 470 480
pF1KB3 ELDLSGIDDLEIDR----------------------YILNESEARVKAELWMRENAEYLR
:::::::::::::: ::::::::::::::::::::::::
CCDS55 ELDLSGIDDLEIDRRDLSMPRCAKAKSQPHFPVLAQYILNESEARVKAELWMRENAEYLR
340 350 360 370 380 390
490 500 510 520 530 540
pF1KB3 EQREKEARIAKEKELGIYKEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EQREKEARIAKEKELGIYKEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVL
400 410 420 430 440 450
550 560 570 580 590 600
pF1KB3 RGLSSAGGGSPHREDAQPEHSASARKLSRRRTPASRSGADPVTSVGKRLRPLVSTQPAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RGLSSAGGGSPHREDAQPEHSASARKLSRRRTPASRSGADPVTSVGKRLRPLVSTQPAKK
460 470 480 490 500 510
610 620 630 640 650 660
pF1KB3 VATGEALLPSSPTLGAEPARPQAVLVESGPVSYHADEEADEEEPDEEDGEPCVSALQMMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VATGEALLPSSPTLGAEPARPQAVLVESGPVSYHADEEADEEEPDEEDGEPCVSALQMMG
520 530 540 550 560 570
670
pF1KB3 SNDYGCDGDEDDGY
::::::::::::::
CCDS55 SNDYGCDGDEDDGY
580
>>CCDS55953.1 BRF1 gene_id:2972|Hs108|chr14 (208 aa)
initn: 1093 init1: 1069 opt: 1069 Z-score: 944.1 bits: 183.4 E(32554): 2.9e-46
Smith-Waterman score: 1069; 99.4% identity (100.0% similar) in 159 aa overlap (1-159:1-159)
10 20 30 40 50 60
pF1KB3 MTGRVCRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MTGRVCRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DGAGKTPTLGGGFHVNLGKESRAQTLQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMAVSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DGAGKTPTLGGGFHVNLGKESRAQTLQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMAVSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 HLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA
::::::::::::::::::::::::::::::::::::::.
CCDS55 HLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVDSLRPASFPTWGCDLGVVTRVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH
CCDS55 TGVYPRCLHASQWPVCAACPVRKFWSVG
190 200
677 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:06:45 2016 done: Sat Nov 5 01:06:46 2016
Total Scan time: 4.420 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]