Result of FASTA (ccds) for
pF1KB3044
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3044, 624 aa
1>>>pF1KB3044 624 - 624 aa - 624 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4288+/-0.00099; mu= 13.7027+/- 0.059
mean_var=87.9432+/-17.327, 0's: 0 Z-trim(105.7): 63 B-trim: 136 in 1/51
Lambda= 0.136764
statistics sampled from 8490 (8549) to 8490 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.263), width: 16
Scan time: 3.120
The best scores are: opt bits E(32554)
CCDS4028.1 COL4A3BP gene_id:10087|Hs108|chr5 ( 624) 4214 841.9 0
CCDS47235.1 COL4A3BP gene_id:10087|Hs108|chr5 ( 752) 4214 842.0 0
CCDS4029.1 COL4A3BP gene_id:10087|Hs108|chr5 ( 598) 2509 505.5 8.2e-143
>>CCDS4028.1 COL4A3BP gene_id:10087|Hs108|chr5 (624 aa)
initn: 4214 init1: 4214 opt: 4214 Z-score: 4495.3 bits: 841.9 E(32554): 0
Smith-Waterman score: 4214; 100.0% identity (100.0% similar) in 624 aa overlap (1-624:1-624)
10 20 30 40 50 60
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 SVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
550 560 570 580 590 600
610 620
pF1KB3 EYPKFLKRFTSYVQEKTAGKPILF
::::::::::::::::::::::::
CCDS40 EYPKFLKRFTSYVQEKTAGKPILF
610 620
>>CCDS47235.1 COL4A3BP gene_id:10087|Hs108|chr5 (752 aa)
initn: 4214 init1: 4214 opt: 4214 Z-score: 4494.0 bits: 842.0 E(32554): 0
Smith-Waterman score: 4214; 100.0% identity (100.0% similar) in 624 aa overlap (1-624:129-752)
10 20 30
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVL
::::::::::::::::::::::::::::::
CCDS47 SPDPSPRGLGASSGAAEGAGAGLLLGCRASMSDNQSWNSSGSEEDPETESGPPVERCGVL
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB3 SKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDECRFDISV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDECRFDISV
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB3 NDSVWYLRAQDPDHRQQWIDAIEQHKTESGYGSESSLRRHGSMVSLVSGASGYSATSTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NDSVWYLRAQDPDHRQQWIDAIEQHKTESGYGSESSLRRHGSMVSLVSGASGYSATSTSS
220 230 240 250 260 270
160 170 180 190 200 210
pF1KB3 FKKGHSLREKLAEMETFRDILCRQVDTLQKYFDACADAVSKDELQRDKVVEDDEDDFPTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FKKGHSLREKLAEMETFRDILCRQVDTLQKYFDACADAVSKDELQRDKVVEDDEDDFPTT
280 290 300 310 320 330
220 230 240 250 260 270
pF1KB3 RSDGDFLHSTNGNKEKLFPHVTPKGINGIDFKGEAITFKATTAGILATLSHCIELMVKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RSDGDFLHSTNGNKEKLFPHVTPKGINGIDFKGEAITFKATTAGILATLSHCIELMVKRE
340 350 360 370 380 390
280 290 300 310 320 330
pF1KB3 DSWQKRLDKETEKKRRTEEAYKNAMTELKKKSHFGGPDYEEGPNSLINEEEFFDAVEAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DSWQKRLDKETEKKRRTEEAYKNAMTELKKKSHFGGPDYEEGPNSLINEEEFFDAVEAAL
400 410 420 430 440 450
340 350 360 370 380 390
pF1KB3 DRQDKIEEQSQSEKVRLHWPTSLPSGDAFSSVGTHRFVQKPYSRSSSMSSIDLVSASDDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DRQDKIEEQSQSEKVRLHWPTSLPSGDAFSSVGTHRFVQKPYSRSSSMSSIDLVSASDDV
460 470 480 490 500 510
400 410 420 430 440 450
pF1KB3 HRFSSQVEEMVQNHMTYSLQDVGGDANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HRFSSQVEEMVQNHMTYSLQDVGGDANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAV
520 530 540 550 560 570
460 470 480 490 500 510
pF1KB3 KGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLS
580 590 600 610 620 630
520 530 540 550 560 570
pF1KB3 VIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISR
640 650 660 670 680 690
580 590 600 610 620
pF1KB3 DNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGKPILF
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGKPILF
700 710 720 730 740 750
>>CCDS4029.1 COL4A3BP gene_id:10087|Hs108|chr5 (598 aa)
initn: 2509 init1: 2509 opt: 2509 Z-score: 2677.5 bits: 505.5 E(32554): 8.2e-143
Smith-Waterman score: 3989; 95.8% identity (95.8% similar) in 624 aa overlap (1-624:1-598)
10 20 30 40 50 60
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 SVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQL
:::::::::: ::::::::::::::::::::::::
CCDS40 SVGTHRFVQK--------------------------VEEMVQNHMTYSLQDVGGDANWQL
370 380 390
430 440 450 460 470 480
pF1KB3 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB3 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
460 470 480 490 500 510
550 560 570 580 590 600
pF1KB3 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
520 530 540 550 560 570
610 620
pF1KB3 EYPKFLKRFTSYVQEKTAGKPILF
::::::::::::::::::::::::
CCDS40 EYPKFLKRFTSYVQEKTAGKPILF
580 590
624 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:03:05 2016 done: Sat Nov 5 07:03:05 2016
Total Scan time: 3.120 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]