Result of FASTA (omim) for
pF1KB3044
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3044, 624 aa
1>>>pF1KB3044 624 - 624 aa - 624 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2116+/-0.000424; mu= 15.3330+/- 0.026
mean_var=101.8880+/-20.352, 0's: 0 Z-trim(113.0): 128 B-trim: 704 in 1/53
Lambda= 0.127061
statistics sampled from 22014 (22145) to 22014 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.26), width: 16
Scan time: 10.240
The best scores are: opt bits E(85289)
XP_006714576 (OMIM: 604677,616351) PREDICTED: coll ( 624) 4214 783.7 0
NP_005704 (OMIM: 604677,616351) collagen type IV a ( 624) 4214 783.7 0
NP_001123577 (OMIM: 604677,616351) collagen type I ( 752) 4214 783.7 0
XP_011541392 (OMIM: 604677,616351) PREDICTED: coll ( 631) 3938 733.1 7e-211
XP_016864408 (OMIM: 604677,616351) PREDICTED: coll ( 598) 2509 471.1 4.8e-132
NP_112729 (OMIM: 604677,616351) collagen type IV a ( 598) 2509 471.1 4.8e-132
XP_011541393 (OMIM: 604677,616351) PREDICTED: coll ( 605) 2509 471.1 4.8e-132
XP_011538903 (OMIM: 606737) PREDICTED: oxysterol-b ( 736) 288 64.1 2e-09
XP_011538902 (OMIM: 606737) PREDICTED: oxysterol-b ( 749) 288 64.1 2.1e-09
NP_683707 (OMIM: 606737) oxysterol-binding protein ( 746) 286 63.7 2.7e-09
XP_011538901 (OMIM: 606737) PREDICTED: oxysterol-b ( 759) 286 63.7 2.7e-09
XP_016855707 (OMIM: 606737) PREDICTED: oxysterol-b ( 713) 263 59.5 4.8e-08
NP_683706 (OMIM: 606737) oxysterol-binding protein ( 723) 263 59.5 4.8e-08
XP_006710381 (OMIM: 606737) PREDICTED: oxysterol-b ( 726) 263 59.5 4.9e-08
NP_078862 (OMIM: 606737) oxysterol-binding protein ( 736) 263 59.5 4.9e-08
NP_002547 (OMIM: 167040) oxysterol-binding protein ( 807) 261 59.1 6.8e-08
XP_011513897 (OMIM: 608639) PREDICTED: pleckstrin ( 439) 252 57.3 1.3e-07
NP_116028 (OMIM: 608639) pleckstrin homology domai ( 440) 252 57.3 1.3e-07
XP_016868234 (OMIM: 608639) PREDICTED: pleckstrin ( 441) 252 57.3 1.3e-07
XP_011513896 (OMIM: 608639) PREDICTED: pleckstrin ( 455) 252 57.3 1.4e-07
XP_005249954 (OMIM: 608639) PREDICTED: pleckstrin ( 459) 252 57.3 1.4e-07
NP_001183956 (OMIM: 608639) pleckstrin homology do ( 459) 252 57.3 1.4e-07
XP_011513894 (OMIM: 608639) PREDICTED: pleckstrin ( 475) 252 57.3 1.4e-07
XP_016868233 (OMIM: 608639) PREDICTED: pleckstrin ( 491) 252 57.3 1.4e-07
XP_011513893 (OMIM: 608639) PREDICTED: pleckstrin ( 491) 252 57.3 1.4e-07
NP_001183955 (OMIM: 608639) pleckstrin homology do ( 519) 252 57.3 1.5e-07
NP_061964 (OMIM: 607774) pleckstrin homology domai ( 300) 247 56.3 1.8e-07
XP_016884198 (OMIM: 606729) PREDICTED: oxysterol-b ( 818) 245 56.2 5.2e-07
XP_011528361 (OMIM: 606729) PREDICTED: oxysterol-b ( 819) 245 56.2 5.3e-07
XP_006724266 (OMIM: 606729) PREDICTED: oxysterol-b ( 866) 245 56.2 5.5e-07
XP_016884197 (OMIM: 606729) PREDICTED: oxysterol-b ( 867) 245 56.2 5.5e-07
XP_005261522 (OMIM: 606729) PREDICTED: oxysterol-b ( 874) 245 56.2 5.5e-07
XP_011528360 (OMIM: 606729) PREDICTED: oxysterol-b ( 905) 245 56.2 5.7e-07
XP_011528359 (OMIM: 606729) PREDICTED: oxysterol-b ( 906) 245 56.2 5.7e-07
NP_001269668 (OMIM: 606729) oxysterol-binding prot ( 915) 245 56.2 5.7e-07
NP_110385 (OMIM: 606729) oxysterol-binding protein ( 916) 245 56.2 5.7e-07
NP_073613 (OMIM: 606739) oxysterol-binding protein ( 747) 213 50.3 2.8e-05
NP_060254 (OMIM: 606738) oxysterol-binding protein ( 764) 176 43.5 0.0032
XP_005264900 (OMIM: 606738) PREDICTED: oxysterol-b ( 769) 176 43.5 0.0032
NP_001167531 (OMIM: 606738) oxysterol-binding prot ( 700) 170 42.4 0.0064
XP_005264901 (OMIM: 606738) PREDICTED: oxysterol-b ( 705) 170 42.4 0.0064
XP_005252887 (OMIM: 604762) PREDICTED: switch-asso ( 436) 166 41.5 0.0073
NP_001284643 (OMIM: 604762) switch-associated prot ( 527) 166 41.6 0.0085
XP_016858842 (OMIM: 612723) PREDICTED: pleckstrin ( 930) 169 42.3 0.0091
NP_055870 (OMIM: 604762) switch-associated protein ( 585) 166 41.6 0.0092
XP_016858841 (OMIM: 612723) PREDICTED: pleckstrin (1013) 169 42.3 0.0097
>>XP_006714576 (OMIM: 604677,616351) PREDICTED: collagen (624 aa)
initn: 4214 init1: 4214 opt: 4214 Z-score: 4180.5 bits: 783.7 E(85289): 0
Smith-Waterman score: 4214; 100.0% identity (100.0% similar) in 624 aa overlap (1-624:1-624)
10 20 30 40 50 60
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 SVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
550 560 570 580 590 600
610 620
pF1KB3 EYPKFLKRFTSYVQEKTAGKPILF
::::::::::::::::::::::::
XP_006 EYPKFLKRFTSYVQEKTAGKPILF
610 620
>>NP_005704 (OMIM: 604677,616351) collagen type IV alpha (624 aa)
initn: 4214 init1: 4214 opt: 4214 Z-score: 4180.5 bits: 783.7 E(85289): 0
Smith-Waterman score: 4214; 100.0% identity (100.0% similar) in 624 aa overlap (1-624:1-624)
10 20 30 40 50 60
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 SVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
550 560 570 580 590 600
610 620
pF1KB3 EYPKFLKRFTSYVQEKTAGKPILF
::::::::::::::::::::::::
NP_005 EYPKFLKRFTSYVQEKTAGKPILF
610 620
>>NP_001123577 (OMIM: 604677,616351) collagen type IV al (752 aa)
initn: 4214 init1: 4214 opt: 4214 Z-score: 4179.3 bits: 783.7 E(85289): 0
Smith-Waterman score: 4214; 100.0% identity (100.0% similar) in 624 aa overlap (1-624:129-752)
10 20 30
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVL
::::::::::::::::::::::::::::::
NP_001 SPDPSPRGLGASSGAAEGAGAGLLLGCRASMSDNQSWNSSGSEEDPETESGPPVERCGVL
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB3 SKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDECRFDISV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDECRFDISV
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB3 NDSVWYLRAQDPDHRQQWIDAIEQHKTESGYGSESSLRRHGSMVSLVSGASGYSATSTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDSVWYLRAQDPDHRQQWIDAIEQHKTESGYGSESSLRRHGSMVSLVSGASGYSATSTSS
220 230 240 250 260 270
160 170 180 190 200 210
pF1KB3 FKKGHSLREKLAEMETFRDILCRQVDTLQKYFDACADAVSKDELQRDKVVEDDEDDFPTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKKGHSLREKLAEMETFRDILCRQVDTLQKYFDACADAVSKDELQRDKVVEDDEDDFPTT
280 290 300 310 320 330
220 230 240 250 260 270
pF1KB3 RSDGDFLHSTNGNKEKLFPHVTPKGINGIDFKGEAITFKATTAGILATLSHCIELMVKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSDGDFLHSTNGNKEKLFPHVTPKGINGIDFKGEAITFKATTAGILATLSHCIELMVKRE
340 350 360 370 380 390
280 290 300 310 320 330
pF1KB3 DSWQKRLDKETEKKRRTEEAYKNAMTELKKKSHFGGPDYEEGPNSLINEEEFFDAVEAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSWQKRLDKETEKKRRTEEAYKNAMTELKKKSHFGGPDYEEGPNSLINEEEFFDAVEAAL
400 410 420 430 440 450
340 350 360 370 380 390
pF1KB3 DRQDKIEEQSQSEKVRLHWPTSLPSGDAFSSVGTHRFVQKPYSRSSSMSSIDLVSASDDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRQDKIEEQSQSEKVRLHWPTSLPSGDAFSSVGTHRFVQKPYSRSSSMSSIDLVSASDDV
460 470 480 490 500 510
400 410 420 430 440 450
pF1KB3 HRFSSQVEEMVQNHMTYSLQDVGGDANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HRFSSQVEEMVQNHMTYSLQDVGGDANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAV
520 530 540 550 560 570
460 470 480 490 500 510
pF1KB3 KGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLS
580 590 600 610 620 630
520 530 540 550 560 570
pF1KB3 VIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISR
640 650 660 670 680 690
580 590 600 610 620
pF1KB3 DNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGKPILF
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGKPILF
700 710 720 730 740 750
>>XP_011541392 (OMIM: 604677,616351) PREDICTED: collagen (631 aa)
initn: 3938 init1: 3938 opt: 3938 Z-score: 3907.0 bits: 733.1 E(85289): 7e-211
Smith-Waterman score: 3938; 100.0% identity (100.0% similar) in 583 aa overlap (1-583:1-583)
10 20 30 40 50 60
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 SVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
:::::::::::::::::::::::::::::::::::::::::::
XP_011 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVTEARLCDIPCWRKKEKK
550 560 570 580 590 600
610 620
pF1KB3 EYPKFLKRFTSYVQEKTAGKPILF
XP_011 KLNALSWNVGSIALSVAQDLGLVYKNDKILQ
610 620 630
>>XP_016864408 (OMIM: 604677,616351) PREDICTED: collagen (598 aa)
initn: 2509 init1: 2509 opt: 2509 Z-score: 2491.6 bits: 471.1 E(85289): 4.8e-132
Smith-Waterman score: 3989; 95.8% identity (95.8% similar) in 624 aa overlap (1-624:1-598)
10 20 30 40 50 60
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 SVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQL
:::::::::: ::::::::::::::::::::::::
XP_016 SVGTHRFVQK--------------------------VEEMVQNHMTYSLQDVGGDANWQL
370 380 390
430 440 450 460 470 480
pF1KB3 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB3 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
460 470 480 490 500 510
550 560 570 580 590 600
pF1KB3 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
520 530 540 550 560 570
610 620
pF1KB3 EYPKFLKRFTSYVQEKTAGKPILF
::::::::::::::::::::::::
XP_016 EYPKFLKRFTSYVQEKTAGKPILF
580 590
>>NP_112729 (OMIM: 604677,616351) collagen type IV alpha (598 aa)
initn: 2509 init1: 2509 opt: 2509 Z-score: 2491.6 bits: 471.1 E(85289): 4.8e-132
Smith-Waterman score: 3989; 95.8% identity (95.8% similar) in 624 aa overlap (1-624:1-598)
10 20 30 40 50 60
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 SVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQL
:::::::::: ::::::::::::::::::::::::
NP_112 SVGTHRFVQK--------------------------VEEMVQNHMTYSLQDVGGDANWQL
370 380 390
430 440 450 460 470 480
pF1KB3 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB3 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
460 470 480 490 500 510
550 560 570 580 590 600
pF1KB3 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
520 530 540 550 560 570
610 620
pF1KB3 EYPKFLKRFTSYVQEKTAGKPILF
::::::::::::::::::::::::
NP_112 EYPKFLKRFTSYVQEKTAGKPILF
580 590
>>XP_011541393 (OMIM: 604677,616351) PREDICTED: collagen (605 aa)
initn: 2509 init1: 2509 opt: 2509 Z-score: 2491.6 bits: 471.1 E(85289): 4.8e-132
Smith-Waterman score: 3713; 95.5% identity (95.5% similar) in 583 aa overlap (1-583:1-557)
10 20 30 40 50 60
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKTESG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGID
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 SVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQL
:::::::::: ::::::::::::::::::::::::
XP_011 SVGTHRFVQK--------------------------VEEMVQNHMTYSLQDVGGDANWQL
370 380 390
430 440 450 460 470 480
pF1KB3 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHV
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB3 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPL
460 470 480 490 500 510
550 560 570 580 590 600
pF1KB3 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKR
:::::::::::::::::::::::::::::::::::::::::::
XP_011 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVTEARLCDIPCWRKKEKK
520 530 540 550 560 570
610 620
pF1KB3 EYPKFLKRFTSYVQEKTAGKPILF
XP_011 KLNALSWNVGSIALSVAQDLGLVYKNDKILQ
580 590 600
>>XP_011538903 (OMIM: 606737) PREDICTED: oxysterol-bindi (736 aa)
initn: 232 init1: 130 opt: 288 Z-score: 290.0 bits: 64.1 E(85289): 2e-09
Smith-Waterman score: 288; 35.0% identity (62.2% similar) in 180 aa overlap (28-201:7-181)
10 20 30 40 50
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNA--LSYYKSE
: :::::: ..::: :: :: :: :::: :.
XP_011 MASIMEGPLSKWTNVMKGWQYRWFVLDYNAGLLSYYTSK
10 20 30
60 70 80 90 100 110
pF1KB3 DETEYGCR-GSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQ---
:. : : : . : ::: : :. : :.:........:.: :.:..:: :.:.
XP_011 DKMMRGSRRGCVRLRGAVIGIDDEDDSTFTITVDQKTFHFQARDADEREKWIHALEETIL
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB3 HKTESGYGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQ
..: . : . ..: .: : : . ... . ... .::.: ... .:: .:
XP_011 RHTLQLQISTTLAFFQSSGISPVLEFSKIIGLDSGFVPSVQDFDKKLTEADAYLQILIEQ
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB3 VDTLQKYFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPK
. : :: . ..:: :: ..::
XP_011 L----KLFDDKLQNCKEDE-QRKSMVESIKHCIVLLQIAKSTINPVDAIYQPSPLEPVIS
160 170 180 190 200 210
>>XP_011538902 (OMIM: 606737) PREDICTED: oxysterol-bindi (749 aa)
initn: 232 init1: 130 opt: 288 Z-score: 289.9 bits: 64.1 E(85289): 2.1e-09
Smith-Waterman score: 288; 35.0% identity (62.2% similar) in 180 aa overlap (28-201:7-181)
10 20 30 40 50
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNA--LSYYKSE
: :::::: ..::: :: :: :: :::: :.
XP_011 MASIMEGPLSKWTNVMKGWQYRWFVLDYNAGLLSYYTSK
10 20 30
60 70 80 90 100 110
pF1KB3 DETEYGCR-GSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQ---
:. : : : . : ::: : :. : :.:........:.: :.:..:: :.:.
XP_011 DKMMRGSRRGCVRLRGAVIGIDDEDDSTFTITVDQKTFHFQARDADEREKWIHALEETIL
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB3 HKTESGYGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQ
..: . : . ..: .: : : . ... . ... .::.: ... .:: .:
XP_011 RHTLQLQISTTLAFFQSSGISPVLEFSKIIGLDSGFVPSVQDFDKKLTEADAYLQILIEQ
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB3 VDTLQKYFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPK
. : :: . ..:: :: ..::
XP_011 L----KLFDDKLQNCKEDE-QRKSMVESIKHCIVLLQIAKDQSNAEKHADGMISTINPVD
160 170 180 190 200 210
>>NP_683707 (OMIM: 606737) oxysterol-binding protein-rel (746 aa)
initn: 266 init1: 130 opt: 286 Z-score: 288.0 bits: 63.7 E(85289): 2.7e-09
Smith-Waterman score: 286; 34.8% identity (61.8% similar) in 178 aa overlap (28-199:7-179)
10 20 30 40 50
pF1KB3 MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNA--LSYYKSE
: :::::: ..::: :: :: :: :::: :.
NP_683 MASIMEGPLSKWTNVMKGWQYRWFVLDYNAGLLSYYTSK
10 20 30
60 70 80 90 100 110
pF1KB3 DETEYGCR-GSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQ---
:. : : : . : ::: : :. : :.:........:.: :.:..:: :.:.
NP_683 DKMMRGSRRGCVRLRGAVIGIDDEDDSTFTITVDQKTFHFQARDADEREKWIHALEETIL
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB3 HKTESGYGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQ
..: . : . ..: .: : : . ... . ... .::.: ... .:: .:
NP_683 RHTLQLQISTTLAFFQSSGISPVLEFSKIIGLDSGFVPSVQDFDKKLTEADAYLQILIEQ
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB3 VDTLQKYFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPK
. : :: . ..:: :: :.
NP_683 L----KLFDDKLQNCKEDE-QRKKIETLKETTNSMVESIKHCIVLLQIAKSTINPVDAIY
160 170 180 190 200 210
624 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:03:05 2016 done: Sat Nov 5 07:03:07 2016
Total Scan time: 10.240 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]