(Circular) (Six-base) MAPSORT of: pF1KB3051.seq Check: 513 from: 1 to: 6758 pF1KB3051 6758 bp With 182 enzymes: SgfI * June 20, 2008 10:22 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 1517 2415 1517 Size: 898 5860 AatII G_ACGT'C Cuts at: 431 799 431 Size: 368 6390 AccI GT'mk_AC Cuts at: 1259 2734 3680 3796 1259 Size: 1475 946 116 4221 Fragments arranged by size: 4221 1475 946 116 Acc65I G'GTAC_C Cuts at: 1273 2183 3774 1273 Size: 910 1591 4257 Fragments arranged by size: 4257 1591 910 AclI AA'CG_TT Cuts at: 6598 6598 Size: 6758 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 268 652 691 1120 1846 3390 3402 4583 5015 Size: 384 39 429 726 1544 12 1181 432 Cuts at: 5015 5762 6030 268 Size: 747 268 996 Fragments arranged by size: 1544 1181 996 747 726 432 429 384 268 39 12 AfeI AGC'GCT Cuts at: 1899 1899 Size: 6758 AflIII A'CryG_T Cuts at: 4110 5214 6191 4110 Size: 1104 977 4677 Fragments arranged by size: 4677 1104 977 AgeI A'CCGG_T Cuts at: 5146 5146 Size: 6758 AhdI GACnn_n'nnGTC Cuts at: 2010 2010 Size: 6758 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 748 780 748 Size: 32 6726 AlwNI CAG_nnn'CTG Cuts at: 246 1152 2316 4063 5630 246 Size: 906 1164 1747 1567 1374 Fragments arranged by size: 1747 1567 1374 1164 906 ApaI G_GGCC'C Cuts at: 1188 1188 Size: 6758 ApaLI G'TGCA_C Cuts at: 1502 5528 1502 Size: 4026 2732 ApoI r'AATT_y Cuts at: 3075 3762 6111 6367 3075 Size: 687 2349 256 3466 Fragments arranged by size: 3466 2349 687 256 AscI GG'CGCG_CC Cuts at: 3020 3020 Size: 6758 AseI AT'TA_AT Cuts at: 20 20 Size: 6758 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6758 AvaI C'yCGr_G Cuts at: 640 697 2196 3778 640 Size: 57 1499 1582 3620 Fragments arranged by size: 3620 1582 1499 57 BamHI G'GATC_C Cuts at: 3783 3783 Size: 6758 BanI G'GyrC_C Cuts at: 421 1273 2108 2183 2303 3774 4188 4436 4471 Size: 852 835 75 120 1471 414 248 35 Cuts at: 4471 421 Size: 2708 Fragments arranged by size: 2708 1471 852 835 414 248 120 75 35 BanII G_rGCy'C Cuts at: 893 1188 2164 2511 2795 3191 3238 3505 3772 Size: 295 976 347 284 396 47 267 267 Cuts at: 3772 4802 893 Size: 1030 2849 Fragments arranged by size: 2849 1030 976 396 347 295 284 267 267 47 BbeI G_GCGC'C Cuts at: 2112 4192 4440 2112 Size: 2080 248 4430 Fragments arranged by size: 4430 2080 248 BbsI GAAGACnn'nnnn_ Cuts at: 1108 2031 1108 Size: 923 5835 BbvCI CC'TCA_GC Cuts at: 2711 2711 Size: 6758 BciVI GTATCCnnnnn_n' Cuts at: 307 4656 5417 6758 307 Size: 4349 761 1341 307 Fragments arranged by size: 4349 1341 761 307 BclI T'GATC_A Cuts at: 611 3437 4278 611 Size: 2826 841 3091 Fragments arranged by size: 3091 2826 841 BglI GCCn_nnn'nGGC Cuts at: 1732 1936 3220 1732 Size: 204 1284 5270 Fragments arranged by size: 5270 1284 204 BglII A'GATC_T Cuts at: 3554 4273 6310 3554 Size: 719 2037 4002 Fragments arranged by size: 4002 2037 719 BlpI GC'TnA_GC Cuts at: 3190 3870 3190 Size: 680 6078 Bme1580I G_kGCm'C Cuts at: 1188 1399 1506 4383 4476 5532 1188 Size: 211 107 2877 93 1056 2414 Fragments arranged by size: 2877 2414 1056 211 107 93 BmgBI CAC'GTC Cuts at: 917 1437 1875 917 Size: 520 438 5800 Fragments arranged by size: 5800 520 438 BmrI ACTGGGnnnn_n' Cuts at: 822 1776 1918 3294 3970 4051 4386 6530 822 Size: 954 142 1376 676 81 335 2144 1050 Fragments arranged by size: 2144 1376 1050 954 676 335 142 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2016 5125 2016 Size: 3109 3649 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 703 1411 1825 2308 2338 2963 3172 3499 703 Size: 708 414 483 30 625 209 327 3962 Fragments arranged by size: 3962 708 625 483 414 327 209 30 Bpu10I CC'TnA_GC Cuts at: 1745 2535 2711 1745 Size: 790 176 5792 Fragments arranged by size: 5792 790 176 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 100 486 3160 3328 3513 3934 4813 5305 5603 Size: 386 2674 168 185 421 879 492 298 Cuts at: 5603 100 Size: 1255 Fragments arranged by size: 2674 1255 879 492 421 386 298 185 168 BsaI GGTCTCn'nnnn_ Cuts at: 536 2575 6462 536 Size: 2039 3887 832 Fragments arranged by size: 3887 2039 832 BsaAI yAC'GTr Cuts at: 1257 4111 1257 Size: 2854 3904 BsaBI GATnn'nnATC Cuts at: 6 1039 1231 4272 6309 6 Size: 1033 192 3041 2037 455 Fragments arranged by size: 3041 2037 1033 455 192 BsaHI Gr'CG_yC Cuts at: 428 796 1822 1979 2061 2109 2837 3254 3284 Size: 368 1026 157 82 48 728 417 30 Cuts at: 3284 3461 4189 4437 5139 6635 428 Size: 177 728 248 702 1496 551 Fragments arranged by size: 1496 1026 728 728 702 551 417 368 248 177 157 82 48 30 BsaWI w'CCGG_w Cuts at: 3947 4468 5146 5420 5567 5978 3947 Size: 521 678 274 147 411 4727 Fragments arranged by size: 4727 678 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1807 1837 3604 3634 1807 Size: 30 1767 30 4931 Fragments arranged by size: 4931 1767 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 922 1903 2062 2065 2305 2308 2346 2458 2875 Size: 981 159 3 240 3 38 112 417 Cuts at: 2875 2953 3004 3043 3046 3055 3228 922 Size: 78 51 39 3 9 173 4452 Fragments arranged by size: 4452 981 417 240 173 159 112 78 51 39 38 9 3 3 3 BseYI C'CCAG_C Cuts at: 326 475 870 1526 1757 1909 2420 2467 4183 Size: 149 395 656 231 152 511 47 1716 Cuts at: 4183 4941 5518 6014 326 Size: 758 577 496 1070 Fragments arranged by size: 1716 1070 758 656 577 511 496 395 231 152 149 47 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1141 1696 1810 1831 2242 3031 3397 3711 1141 Size: 555 114 21 411 789 366 314 4188 Fragments arranged by size: 4188 789 555 411 366 314 114 21 BsiEI CG_ry'CG Cuts at: 104 141 2077 3229 4300 4346 5554 104 Size: 37 1936 1152 1071 46 1208 1308 Fragments arranged by size: 1936 1308 1208 1152 1071 46 37 BsiHKAI G_wGCw'C Cuts at: 849 968 1506 2164 2210 2795 3191 3505 3772 Size: 119 538 658 46 585 396 314 267 Cuts at: 3772 4550 4740 5532 849 Size: 778 190 792 2075 Fragments arranged by size: 2075 792 778 658 585 538 396 314 267 190 119 46 BsmI GAATG_Cn' Cuts at: 2463 3521 2463 Size: 1058 5700 BsmBI CGTCTCn'nnnn_ Cuts at: 3291 3291 Size: 6758 Bsp1286I G_dGCh'C Cuts at: 849 893 968 1188 1399 1506 2164 2210 2511 Size: 44 75 220 211 107 658 46 301 Cuts at: 2511 2795 3191 3238 3505 3772 4383 4476 4550 Size: 284 396 47 267 267 611 93 74 Cuts at: 4550 4740 4802 5532 849 Size: 190 62 730 2075 Fragments arranged by size: 2075 730 658 611 396 301 284 267 267 220 211 190 107 93 75 74 62 47 46 44 BspEI T'CCGG_A Cuts at: 5978 5978 Size: 6758 BspHI T'CATG_A Cuts at: 560 5934 560 Size: 5374 1384 BspMI ACCTGCnnnn'nnnn_ Cuts at: 1202 1517 2415 3808 4022 4324 4705 1202 Size: 315 898 1393 214 302 381 3255 Fragments arranged by size: 3255 1393 898 381 315 302 214 BsrBI CCG'CTC Cuts at: 50 777 1818 2298 2943 3620 5050 5104 6588 Size: 727 1041 480 645 677 1430 54 1484 Cuts at: 6588 6753 50 Size: 165 55 Fragments arranged by size: 1484 1430 1041 727 677 645 480 165 55 54 BsrDI GCAATG_nn' Cuts at: 1091 3362 4670 1091 Size: 2271 1308 3179 Fragments arranged by size: 3179 2271 1308 BsrFI r'CCGG_y Cuts at: 1772 2072 2306 3006 4756 4937 5146 1772 Size: 300 234 700 1750 181 209 3384 Fragments arranged by size: 3384 1750 700 300 234 209 181 BsrGI T'GTAC_A Cuts at: 617 3611 617 Size: 2994 3764 BssHII G'CGCG_C Cuts at: 3020 3020 Size: 6758 BssSI C'ACGA_G Cuts at: 2044 3391 5029 5387 2044 Size: 1347 1638 358 3415 Fragments arranged by size: 3415 1638 1347 358 BstAPI GCAn_nnn'nTGC Cuts at: 4135 4135 Size: 6758 BstBI TT'CG_AA Cuts at: 5119 5119 Size: 6758 BstXI CCAn_nnnn'nTGG Cuts at: 546 3150 546 Size: 2604 4154 BstYI r'GATC_y Cuts at: 1 452 1094 1538 1568 3554 3783 4250 4273 Size: 451 642 444 30 1986 229 467 23 Cuts at: 4273 4608 4854 5866 5952 5964 6310 1 Size: 335 246 1012 86 12 346 449 Fragments arranged by size: 1986 1012 642 467 451 449 444 346 335 246 229 86 30 23 12 BtgI C'CryG_G Cuts at: 107 174 865 2216 2390 2612 2783 107 Size: 67 691 1351 174 222 171 4082 Fragments arranged by size: 4082 1351 691 222 174 171 67 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 246 1401 2153 2394 4708 4889 5052 246 Size: 1155 752 241 2314 181 163 1952 Fragments arranged by size: 2314 1952 1155 752 241 181 163 BtsI GCAGTG_nn' Cuts at: 968 1153 3699 4001 968 Size: 185 2546 302 3725 Fragments arranged by size: 3725 2546 302 185 DraI TTT'AAA Cuts at: 3757 3757 Size: 6758 DrdI GACnn_nn'nnGTC Cuts at: 510 570 2236 3130 4464 5322 510 Size: 60 1666 894 1334 858 1946 Fragments arranged by size: 1946 1666 1334 894 858 60 EaeI y'GGCC_r Cuts at: 737 1407 1439 1514 2074 3140 3226 3743 4343 Size: 670 32 75 560 1066 86 517 600 Cuts at: 4343 4517 4908 4935 6280 737 Size: 174 391 27 1345 1215 Fragments arranged by size: 1345 1215 1066 670 600 560 517 391 174 86 75 32 27 EagI C'GGCC_G Cuts at: 2074 3226 4343 2074 Size: 1152 1117 4489 Fragments arranged by size: 4489 1152 1117 EarI CTCTTCn'nnn_ Cuts at: 2090 2620 3719 4781 4991 2090 Size: 530 1099 1062 210 3857 Fragments arranged by size: 3857 1099 1062 530 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 2101 4966 5276 5422 6568 2101 Size: 2865 310 146 1146 2291 Fragments arranged by size: 2865 2291 1146 310 146 EcoICRI GAG'CTC Cuts at: 2162 2793 3189 3503 3770 2162 Size: 631 396 314 267 5150 Fragments arranged by size: 5150 631 396 314 267 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 268 652 691 703 1120 1411 1825 1846 2308 Size: 384 39 12 417 291 414 21 462 Cuts at: 2308 2338 2963 3172 3390 3402 3499 4583 5015 Size: 30 625 209 218 12 97 1084 432 Cuts at: 5015 5762 6030 268 Size: 747 268 996 Fragments arranged by size: 1084 996 747 625 462 432 417 414 384 291 268 218 209 97 39 30 21 12 12 EcoNI CCTnn'n_nnAGG Cuts at: 591 591 Size: 6758 EcoO109I rG'GnC_Cy Cuts at: 687 816 1134 1185 2715 3350 3897 687 Size: 129 318 51 1530 635 547 3548 Fragments arranged by size: 3548 1530 635 547 318 129 51 EcoRI G'AATT_C Cuts at: 3762 3762 Size: 6758 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 390 3420 4777 390 Size: 3030 1357 2371 Fragments arranged by size: 3030 2371 1357 FspI TGC'GCA Cuts at: 4539 4539 Size: 6758 HaeII r_GCGC'y Cuts at: 1004 1745 1901 2112 2373 4192 4440 5462 6441 Size: 741 156 211 261 1819 248 1022 979 Cuts at: 6441 1004 Size: 1321 Fragments arranged by size: 1819 1321 1022 979 741 261 248 211 156 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 305 337 432 464 1807 1839 1996 2028 2881 Size: 32 95 32 1343 32 157 32 853 Cuts at: 2881 2913 3429 3461 4600 4630 4632 4662 305 Size: 32 516 32 1139 30 2 30 2401 Fragments arranged by size: 2401 1343 1139 853 516 157 95 32 32 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 3681 3797 3681 Size: 116 6642 HindIII A'AGCT_T Cuts at: 1858 1858 Size: 6758 KasI G'GCGC_C Cuts at: 2108 4188 4436 2108 Size: 2080 248 4430 Fragments arranged by size: 4430 2080 248 KpnI G_GTAC'C Cuts at: 1277 2187 3778 1277 Size: 910 1591 4257 Fragments arranged by size: 4257 1591 910 MluI A'CGCG_T Cuts at: 6191 6191 Size: 6758 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1352 2060 3314 5429 5613 1352 Size: 708 1254 2115 184 2497 Fragments arranged by size: 2497 2115 1254 708 184 MscI TGG'CCA Cuts at: 739 1441 1516 3142 3745 4519 739 Size: 702 75 1626 603 774 2978 Fragments arranged by size: 2978 1626 774 702 603 75 MslI CAynn'nnrTG Cuts at: 265 349 1372 1447 2215 3328 3526 4747 4874 Size: 84 1023 75 768 1113 198 1221 127 Cuts at: 4874 265 Size: 2149 Fragments arranged by size: 2149 1221 1113 1023 768 198 127 84 75 MspA1I CmG'CkG Cuts at: 176 326 867 1530 1839 2058 2998 3273 3422 Size: 150 541 663 309 219 940 275 149 Cuts at: 3422 3869 4183 4543 5556 5801 176 Size: 447 314 360 1013 245 1133 Fragments arranged by size: 1133 1013 940 663 541 447 360 314 309 275 245 219 150 149 NaeI GCC'GGC Cuts at: 4939 4939 Size: 6758 NarI GG'CG_CC Cuts at: 2109 4189 4437 2109 Size: 2080 248 4430 Fragments arranged by size: 4430 2080 248 NcoI C'CATG_G Cuts at: 107 2612 107 Size: 2505 4253 NgoMIV G'CCGG_C Cuts at: 4937 4937 Size: 6758 NspI r_CATG'y Cuts at: 147 990 3811 4311 5218 147 Size: 843 2821 500 907 1687 Fragments arranged by size: 2821 1687 907 843 500 PasI CC'CwG_GG Cuts at: 2030 2030 Size: 6758 PciI A'CATG_T Cuts at: 5214 5214 Size: 6758 PflMI CCAn_nnn'nTGG Cuts at: 812 1431 1614 1764 2427 812 Size: 619 183 150 663 5143 Fragments arranged by size: 5143 663 619 183 150 PmeI GTTT'AAAC Cuts at: 3757 3757 Size: 6758 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3658 3690 5897 5929 3658 Size: 32 2207 32 4487 Fragments arranged by size: 4487 2207 32 32 PpuMI rG'GwC_Cy Cuts at: 687 816 1134 2715 3350 687 Size: 129 318 1581 635 4095 Fragments arranged by size: 4095 1581 635 318 129 PspOMI G'GGCC_C Cuts at: 1184 1184 Size: 6758 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 610 642 1051 1083 610 Size: 32 409 32 6285 Fragments arranged by size: 6285 409 32 32 PstI C_TGCA'G Cuts at: 164 1148 1321 1598 1712 1838 3119 3427 3805 Size: 984 173 277 114 126 1281 308 378 Cuts at: 3805 4490 164 Size: 685 2432 Fragments arranged by size: 2432 1281 984 685 378 308 277 173 126 114 PvuI CG_AT'CG Cuts at: 104 104 Size: 6758 PvuII CAG'CTG Cuts at: 326 1839 3273 3422 4183 4543 326 Size: 1513 1434 149 761 360 2541 Fragments arranged by size: 2541 1513 1434 761 360 149 RsrII CG'GwC_CG Cuts at: 4953 4953 Size: 6758 SacI G_AGCT'C Cuts at: 2164 2795 3191 3505 3772 2164 Size: 631 396 314 267 5150 Fragments arranged by size: 5150 631 396 314 267 SacII CC_GC'GG Cuts at: 177 868 177 Size: 691 6067 SalI G'TCGA_C Cuts at: 3679 3795 3679 Size: 116 6642 SanDI GG'GwC_CC Cuts at: 3350 3350 Size: 6758 SapI GCTCTTCn'nnn_ Cuts at: 2090 2620 4781 4991 2090 Size: 530 2161 210 3857 Fragments arranged by size: 3857 2161 530 210 SbfI CC_TGCA'GG Cuts at: 3805 3805 Size: 6758 ScaI AGT'ACT Cuts at: 6275 6275 Size: 6758 SfcI C'TryA_G Cuts at: 33 160 1144 1317 1594 1708 1834 2502 3115 Size: 127 984 173 277 114 126 668 613 Cuts at: 3115 3423 3453 3801 4486 5479 5670 33 Size: 308 30 348 685 993 191 1121 Fragments arranged by size: 1121 993 984 685 668 613 348 308 277 191 173 127 126 114 30 SfiI GGCCn_nnn'nGGCC Cuts at: 1936 1936 Size: 6758 SfoI GGC'GCC Cuts at: 2110 4190 4438 2110 Size: 2080 248 4430 Fragments arranged by size: 4430 2080 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6758 SmaI CCC'GGG Cuts at: 699 2198 3780 699 Size: 1499 1582 3677 Fragments arranged by size: 3677 1582 1499 SmlI C'TyrA_G Cuts at: 115 465 3175 3343 3492 3913 4828 5320 5582 Size: 350 2710 168 149 421 915 492 262 Cuts at: 5582 115 Size: 1291 Fragments arranged by size: 2710 1291 915 492 421 350 262 168 149 SpeI A'CTAG_T Cuts at: 67 67 Size: 6758 SphI G_CATG'C Cuts at: 990 3811 4311 990 Size: 2821 500 3437 Fragments arranged by size: 3437 2821 500 StuI AGG'CCT Cuts at: 1967 1967 Size: 6758 StyI C'CwwG_G Cuts at: 107 1868 1934 2612 3892 4246 107 Size: 1761 66 678 1280 354 2619 Fragments arranged by size: 2619 1761 1280 678 354 66 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 1540 1771 4341 4474 4933 5142 1540 Size: 231 2570 133 459 209 3156 Fragments arranged by size: 3156 2570 459 231 209 133 TatI w'GTAC_w Cuts at: 617 1337 3611 6273 617 Size: 720 2274 2662 1102 Fragments arranged by size: 2662 2274 1102 720 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 1099 1131 3559 3591 3678 3710 6275 6307 1099 Size: 32 2428 32 87 32 2565 32 1550 Fragments arranged by size: 2565 2428 1550 87 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 169 2434 3354 4555 169 Size: 2265 920 1201 2372 Fragments arranged by size: 2372 2265 1201 920 XbaI T'CTAG_A Cuts at: 3789 3789 Size: 6758 XcmI CCAnnnn_n'nnnnTGG Cuts at: 4253 4253 Size: 6758 XmaI C'CCGG_G Cuts at: 697 2196 3778 697 Size: 1499 1582 3677 Fragments arranged by size: 3677 1582 1499 ZraI GAC'GTC Cuts at: 429 797 429 Size: 368 6390 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AfeI AflIII AgeI AhdI AloI AlwNI ApaI ApaLI ApoI AscI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstXI BstYI BtgI BtgZI BtsI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PasI PciI PflMI PmeI PpiI PpuMI PspOMI PsrI PstI PvuI PvuII RsrII SacI SacII SalI SanDI SapI SbfI ScaI SfcI SfiI SfoI SgfI SmaI SmlI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI ZraI Enzymes that do not cut: AflII AleI AlfI AvrII BaeI BcgI BfrBI BmtI BsiWI BstEII BstZ17I Bsu36I ClaI CspCI DraIII EcoRV FseI FspAI HpaI MfeI NdeI NheI NotI NruI NsiI PacI PfoI PmlI PshAI PsiI PspXI SexAI SgrAI SnaBI SrfI SspI SwaI XhoI XmnI