Result of FASTA (ccds) for
pF1KB3077
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3077, 262 aa
1>>>pF1KB3077 262 - 262 aa - 262 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0988+/-0.00074; mu= 16.4488+/- 0.045
mean_var=67.7822+/-13.307, 0's: 0 Z-trim(108.9): 8 B-trim: 0 in 0/52
Lambda= 0.155782
statistics sampled from 10488 (10494) to 10488 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.322), width: 16
Scan time: 2.370
The best scores are: opt bits E(32554)
CCDS43843.1 SPIN1 gene_id:10927|Hs108|chr9 ( 262) 1786 409.9 9.4e-115
CCDS43963.1 SPIN3 gene_id:169981|Hs108|chrX ( 258) 1502 346.0 1.5e-95
CCDS35311.1 SPIN2B gene_id:474343|Hs108|chrX ( 258) 1385 319.7 1.2e-87
CCDS35312.1 SPIN2A gene_id:54466|Hs108|chrX ( 258) 1380 318.6 2.7e-87
CCDS43964.1 SPIN4 gene_id:139886|Hs108|chrX ( 249) 1219 282.4 2.1e-76
CCDS65274.1 SPIN2B gene_id:474343|Hs108|chrX ( 157) 496 119.8 1.2e-27
>>CCDS43843.1 SPIN1 gene_id:10927|Hs108|chr9 (262 aa)
initn: 1786 init1: 1786 opt: 1786 Z-score: 2173.7 bits: 409.9 E(32554): 9.4e-115
Smith-Waterman score: 1786; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262)
10 20 30 40 50 60
pF1KB3 MKTPFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MKTPFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 GWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 SRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKP
190 200 210 220 230 240
250 260
pF1KB3 SVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::::
CCDS43 SVYFIKFDDDFHIYVYDLVKTS
250 260
>>CCDS43963.1 SPIN3 gene_id:169981|Hs108|chrX (258 aa)
initn: 1358 init1: 1358 opt: 1502 Z-score: 1828.8 bits: 346.0 E(32554): 1.5e-95
Smith-Waterman score: 1502; 82.9% identity (95.1% similar) in 263 aa overlap (1-262:1-258)
10 20 30 40 50
pF1KB3 MKTPFGKTP-GQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ
:::::::. :::::. :::..::..:.:....:::::: .:.:::: ::::::::
CCDS43 MKTPFGKAAAGQRSRTGAGHGSVSVTMIKRKAAHKKHRS-----RPTSQPRGNIVGCRIQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA
::::.:. :.:::::::::::::::::::::::::::::::::..:::::.:::::.:::
CCDS43 HGWKDGDEPLTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELHRDERVSSLEVLPNRVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY
.:::::.:::. :.::::::.::::.:::.::::::::.:::::::::::::::::::::
CCDS43 SSRISDTHLAEIMVGKAVEHIFETEEGSKNEWRGMVLAQAPVMNTWFYITYEKDPVLYMY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
:::::::.:::::. :::::: ::::::::.::::::::::::.::::::::::::::::
CCDS43 QLLDDYKDGDLRILQDSNDSPLAEREPGEVIDSLVGKQVEYAKDDGSKRTGMVIHQVEAK
180 190 200 210 220 230
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
:::::::::::::::::::::::
CCDS43 PSVYFIKFDDDFHIYVYDLVKTS
240 250
>>CCDS35311.1 SPIN2B gene_id:474343|Hs108|chrX (258 aa)
initn: 1423 init1: 1288 opt: 1385 Z-score: 1686.7 bits: 319.7 E(32554): 1.2e-87
Smith-Waterman score: 1385; 76.8% identity (92.0% similar) in 263 aa overlap (1-262:1-258)
10 20 30 40 50
pF1KB3 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ
:::: .. . ::..:: ::.: :::: ::..:.::.:. .: ::::::::::::.
CCDS35 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA
::::::. :.::::::::::::.::::::.::::.::::::::..:::: .:..: ::::
CCDS35 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY
.:.::::.::.:.:::::::::: : ::::::::::::.::.:..:::::::::::::::
CCDS35 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
:::::::::::::::.:..:::.::::: :::.:.::.:::.::::::: ::::::::::
CCDS35 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK
180 190 200 210 220 230
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::: :
CCDS35 PSVYFIKFDDDFHIYVYDLVKKS
240 250
>>CCDS35312.1 SPIN2A gene_id:54466|Hs108|chrX (258 aa)
initn: 1418 init1: 1283 opt: 1380 Z-score: 1680.6 bits: 318.6 E(32554): 2.7e-87
Smith-Waterman score: 1380; 76.4% identity (92.0% similar) in 263 aa overlap (1-262:1-258)
10 20 30 40 50
pF1KB3 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ
:::: .. . ::..:: ::.: :::: ::..:.::.:. .: ::::::::::::.
CCDS35 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA
::::::. :.::::::::::::.::::::.::::.::::::::..:::: .:..: ::::
CCDS35 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY
.:.::::.::.:.:::::::::: : ::::::::::::.::.:..:::::::::::::::
CCDS35 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
:::::::::::::::.:..:::.::::: :::.:.::.:::.::::::: ::::::::.:
CCDS35 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVETK
180 190 200 210 220 230
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::: :
CCDS35 PSVYFIKFDDDFHIYVYDLVKKS
240 250
>>CCDS43964.1 SPIN4 gene_id:139886|Hs108|chrX (249 aa)
initn: 737 init1: 674 opt: 1219 Z-score: 1485.3 bits: 282.4 E(32554): 2.1e-76
Smith-Waterman score: 1219; 75.1% identity (86.9% similar) in 245 aa overlap (18-261:10-248)
10 20 30 40 50 60
pF1KB3 MKTPFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQH
: :::: .:::: .:.:.: ::. :::::::::::
CCDS43 MSPPTVPPMGVDGVSAYLMKKRHTHRKQRR-----KPTFLTRRNIVGCRIQH
10 20 30 40
70 80 90 100 110 120
pF1KB3 GWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVAT
:::::: :: :::::::.:: :.:.::.::::: : ::::::..:.:: :::.::.:: :
CCDS43 GWKEGNEPVEQWKGTVLEQVSVKPTLYIIKYDGKDSVYGLELHRDKRVLALEILPERVPT
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB3 SRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQ
:: :..:::..:::::::.:: : :.::::.::::::::::.::::::::::::::::
CCDS43 PRI-DSRLADSLIGKAVEHVFEGEHGTKDEWKGMVLARAPVMDTWFYITYEKDPVLYMYT
110 120 130 140 150 160
190 200 210 220 230
pF1KB3 LLDDYKEGDLRIMPDSNDS-PPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
::::::.:::::.:::: : ::.:::::::::::::::.::.:::::::. :::: ::
CCDS43 LLDDYKDGDLRIIPDSNYYFPTAEQEPGEVVDSLVGKQVEHAKDDGSKRTGIFIHQVVAK
170 180 190 200 210 220
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
:::::::::::.::::: ::::
CCDS43 PSVYFIKFDDDIHIYVYGLVKTP
230 240
>>CCDS65274.1 SPIN2B gene_id:474343|Hs108|chrX (157 aa)
initn: 849 init1: 493 opt: 496 Z-score: 610.0 bits: 119.8 E(32554): 1.2e-27
Smith-Waterman score: 605; 46.4% identity (55.1% similar) in 263 aa overlap (1-262:1-157)
10 20 30 40 50
pF1KB3 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ
:::: .. . ::..:: ::.: :::: ::..:.::.:. .: ::::::::::::.
CCDS65 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA
::::::. :.::::::::::
CCDS65 HGWKEGDEPITQWKGTVLDQ----------------------------------------
60 70
120 130 140 150 160 170
pF1KB3 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY
CCDS65 ------------------------------------------------------------
180 190 200 210 220 230
pF1KB3 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
::::::::::::::.:..:::.::::: :::.:.::.:::.::::::: ::::::::::
CCDS65 -LLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK
80 90 100 110 120 130
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::: :
CCDS65 PSVYFIKFDDDFHIYVYDLVKKS
140 150
262 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:49:32 2016 done: Sat Nov 5 04:49:32 2016
Total Scan time: 2.370 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]