Result of FASTA (omim) for
pF1KB3077
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3077, 262 aa
1>>>pF1KB3077 262 - 262 aa - 262 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9241+/-0.00032; mu= 17.4541+/- 0.020
mean_var=68.8876+/-13.627, 0's: 0 Z-trim(116.0): 19 B-trim: 0 in 0/54
Lambda= 0.154527
statistics sampled from 26755 (26774) to 26755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.314), width: 16
Scan time: 6.140
The best scores are: opt bits E(85289)
NP_006708 (OMIM: 609936) spindlin-1 [Homo sapiens] ( 262) 1786 406.7 2.1e-113
NP_001006684 (OMIM: 300517) spindlin-2B isoform 1 ( 258) 1385 317.3 1.7e-86
XP_011529090 (OMIM: 300517) PREDICTED: spindlin-2B ( 258) 1385 317.3 1.7e-86
NP_001006682 (OMIM: 300517) spindlin-2B isoform 1 ( 258) 1385 317.3 1.7e-86
XP_005262066 (OMIM: 300517) PREDICTED: spindlin-2B ( 258) 1385 317.3 1.7e-86
XP_005262067 (OMIM: 300517) PREDICTED: spindlin-2B ( 258) 1385 317.3 1.7e-86
NP_001006683 (OMIM: 300517) spindlin-2B isoform 1 ( 258) 1385 317.3 1.7e-86
XP_016885041 (OMIM: 300517) PREDICTED: spindlin-2B ( 258) 1385 317.3 1.7e-86
XP_005262065 (OMIM: 300517) PREDICTED: spindlin-2B ( 292) 1385 317.4 1.9e-86
XP_005262073 (OMIM: 300621) PREDICTED: spindlin-2A ( 258) 1380 316.2 3.7e-86
XP_016885087 (OMIM: 300621) PREDICTED: spindlin-2A ( 258) 1380 316.2 3.7e-86
XP_005262076 (OMIM: 300621) PREDICTED: spindlin-2A ( 258) 1380 316.2 3.7e-86
XP_005262074 (OMIM: 300621) PREDICTED: spindlin-2A ( 258) 1380 316.2 3.7e-86
NP_061876 (OMIM: 300621) spindlin-2A [Homo sapiens ( 258) 1380 316.2 3.7e-86
NP_001269390 (OMIM: 300517) spindlin-2B isoform 2 ( 157) 496 119.0 5.4e-27
NP_001269391 (OMIM: 300517) spindlin-2B isoform 2 ( 157) 496 119.0 5.4e-27
XP_011529091 (OMIM: 300517) PREDICTED: spindlin-2B ( 157) 496 119.0 5.4e-27
XP_005262075 (OMIM: 300621) PREDICTED: spindlin-2A ( 199) 491 117.9 1.4e-26
XP_016885088 (OMIM: 300621) PREDICTED: spindlin-2A ( 176) 331 82.2 7e-16
>>NP_006708 (OMIM: 609936) spindlin-1 [Homo sapiens] (262 aa)
initn: 1786 init1: 1786 opt: 1786 Z-score: 2156.8 bits: 406.7 E(85289): 2.1e-113
Smith-Waterman score: 1786; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262)
10 20 30 40 50 60
pF1KB3 MKTPFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MKTPFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 GWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 SRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKP
190 200 210 220 230 240
250 260
pF1KB3 SVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::::
NP_006 SVYFIKFDDDFHIYVYDLVKTS
250 260
>>NP_001006684 (OMIM: 300517) spindlin-2B isoform 1 [Hom (258 aa)
initn: 1423 init1: 1288 opt: 1385 Z-score: 1673.8 bits: 317.3 E(85289): 1.7e-86
Smith-Waterman score: 1385; 76.8% identity (92.0% similar) in 263 aa overlap (1-262:1-258)
10 20 30 40 50
pF1KB3 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ
:::: .. . ::..:: ::.: :::: ::..:.::.:. .: ::::::::::::.
NP_001 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA
::::::. :.::::::::::::.::::::.::::.::::::::..:::: .:..: ::::
NP_001 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY
.:.::::.::.:.:::::::::: : ::::::::::::.::.:..:::::::::::::::
NP_001 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
:::::::::::::::.:..:::.::::: :::.:.::.:::.::::::: ::::::::::
NP_001 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK
180 190 200 210 220 230
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::: :
NP_001 PSVYFIKFDDDFHIYVYDLVKKS
240 250
>>XP_011529090 (OMIM: 300517) PREDICTED: spindlin-2B iso (258 aa)
initn: 1423 init1: 1288 opt: 1385 Z-score: 1673.8 bits: 317.3 E(85289): 1.7e-86
Smith-Waterman score: 1385; 76.8% identity (92.0% similar) in 263 aa overlap (1-262:1-258)
10 20 30 40 50
pF1KB3 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ
:::: .. . ::..:: ::.: :::: ::..:.::.:. .: ::::::::::::.
XP_011 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA
::::::. :.::::::::::::.::::::.::::.::::::::..:::: .:..: ::::
XP_011 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY
.:.::::.::.:.:::::::::: : ::::::::::::.::.:..:::::::::::::::
XP_011 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
:::::::::::::::.:..:::.::::: :::.:.::.:::.::::::: ::::::::::
XP_011 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK
180 190 200 210 220 230
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::: :
XP_011 PSVYFIKFDDDFHIYVYDLVKKS
240 250
>>NP_001006682 (OMIM: 300517) spindlin-2B isoform 1 [Hom (258 aa)
initn: 1423 init1: 1288 opt: 1385 Z-score: 1673.8 bits: 317.3 E(85289): 1.7e-86
Smith-Waterman score: 1385; 76.8% identity (92.0% similar) in 263 aa overlap (1-262:1-258)
10 20 30 40 50
pF1KB3 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ
:::: .. . ::..:: ::.: :::: ::..:.::.:. .: ::::::::::::.
NP_001 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA
::::::. :.::::::::::::.::::::.::::.::::::::..:::: .:..: ::::
NP_001 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY
.:.::::.::.:.:::::::::: : ::::::::::::.::.:..:::::::::::::::
NP_001 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
:::::::::::::::.:..:::.::::: :::.:.::.:::.::::::: ::::::::::
NP_001 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK
180 190 200 210 220 230
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::: :
NP_001 PSVYFIKFDDDFHIYVYDLVKKS
240 250
>>XP_005262066 (OMIM: 300517) PREDICTED: spindlin-2B iso (258 aa)
initn: 1423 init1: 1288 opt: 1385 Z-score: 1673.8 bits: 317.3 E(85289): 1.7e-86
Smith-Waterman score: 1385; 76.8% identity (92.0% similar) in 263 aa overlap (1-262:1-258)
10 20 30 40 50
pF1KB3 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ
:::: .. . ::..:: ::.: :::: ::..:.::.:. .: ::::::::::::.
XP_005 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA
::::::. :.::::::::::::.::::::.::::.::::::::..:::: .:..: ::::
XP_005 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY
.:.::::.::.:.:::::::::: : ::::::::::::.::.:..:::::::::::::::
XP_005 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
:::::::::::::::.:..:::.::::: :::.:.::.:::.::::::: ::::::::::
XP_005 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK
180 190 200 210 220 230
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::: :
XP_005 PSVYFIKFDDDFHIYVYDLVKKS
240 250
>>XP_005262067 (OMIM: 300517) PREDICTED: spindlin-2B iso (258 aa)
initn: 1423 init1: 1288 opt: 1385 Z-score: 1673.8 bits: 317.3 E(85289): 1.7e-86
Smith-Waterman score: 1385; 76.8% identity (92.0% similar) in 263 aa overlap (1-262:1-258)
10 20 30 40 50
pF1KB3 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ
:::: .. . ::..:: ::.: :::: ::..:.::.:. .: ::::::::::::.
XP_005 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA
::::::. :.::::::::::::.::::::.::::.::::::::..:::: .:..: ::::
XP_005 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY
.:.::::.::.:.:::::::::: : ::::::::::::.::.:..:::::::::::::::
XP_005 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
:::::::::::::::.:..:::.::::: :::.:.::.:::.::::::: ::::::::::
XP_005 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK
180 190 200 210 220 230
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::: :
XP_005 PSVYFIKFDDDFHIYVYDLVKKS
240 250
>>NP_001006683 (OMIM: 300517) spindlin-2B isoform 1 [Hom (258 aa)
initn: 1423 init1: 1288 opt: 1385 Z-score: 1673.8 bits: 317.3 E(85289): 1.7e-86
Smith-Waterman score: 1385; 76.8% identity (92.0% similar) in 263 aa overlap (1-262:1-258)
10 20 30 40 50
pF1KB3 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ
:::: .. . ::..:: ::.: :::: ::..:.::.:. .: ::::::::::::.
NP_001 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA
::::::. :.::::::::::::.::::::.::::.::::::::..:::: .:..: ::::
NP_001 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY
.:.::::.::.:.:::::::::: : ::::::::::::.::.:..:::::::::::::::
NP_001 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
:::::::::::::::.:..:::.::::: :::.:.::.:::.::::::: ::::::::::
NP_001 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK
180 190 200 210 220 230
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::: :
NP_001 PSVYFIKFDDDFHIYVYDLVKKS
240 250
>>XP_016885041 (OMIM: 300517) PREDICTED: spindlin-2B iso (258 aa)
initn: 1423 init1: 1288 opt: 1385 Z-score: 1673.8 bits: 317.3 E(85289): 1.7e-86
Smith-Waterman score: 1385; 76.8% identity (92.0% similar) in 263 aa overlap (1-262:1-258)
10 20 30 40 50
pF1KB3 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ
:::: .. . ::..:: ::.: :::: ::..:.::.:. .: ::::::::::::.
XP_016 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA
::::::. :.::::::::::::.::::::.::::.::::::::..:::: .:..: ::::
XP_016 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY
.:.::::.::.:.:::::::::: : ::::::::::::.::.:..:::::::::::::::
XP_016 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
:::::::::::::::.:..:::.::::: :::.:.::.:::.::::::: ::::::::::
XP_016 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK
180 190 200 210 220 230
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::: :
XP_016 PSVYFIKFDDDFHIYVYDLVKKS
240 250
>>XP_005262065 (OMIM: 300517) PREDICTED: spindlin-2B iso (292 aa)
initn: 1423 init1: 1288 opt: 1385 Z-score: 1673.0 bits: 317.4 E(85289): 1.9e-86
Smith-Waterman score: 1385; 76.8% identity (92.0% similar) in 263 aa overlap (1-262:35-292)
10 20
pF1KB3 MKTPFGK-TPGQRSRADAGHAGVSANMMKK
:::: .. . ::..:: ::.: :::: ::
XP_005 WAPGKGGVGECGEQHEKGVGTGARQGFEAGMKTPNAQEAEGQQTRAAAGRATGSANMTKK
10 20 30 40 50 60
30 40 50 60 70 80
pF1KB3 RTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLI
..:.::.:. .: ::::::::::::.::::::. :.::::::::::::.::::::.
XP_005 KVSQKKQRG-----RPSSQPRRNIVGCRISHGWKEGDEPITQWKGTVLDQVPINPSLYLV
70 80 90 100 110
90 100 110 120 130 140
pF1KB3 KYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKD
::::.::::::::..:::: .:..: ::::.:.::::.::.:.:::::::::: : ::::
XP_005 KYDGIDCVYGLELHRDERVLSLKILSDRVASSHISDANLANTIIGKAVEHMFEGEHGSKD
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB3 EWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEV
::::::::.::.:..::::::::::::::::::::::::::::::.:..:::.::::: :
XP_005 EWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDDYKEGDLRIMPESSESPPTEREPGGV
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB3 VDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS
::.:.::.:::.::::::: ::::::::::::::::::::::::::::::: :
XP_005 VDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKKS
240 250 260 270 280 290
>>XP_005262073 (OMIM: 300621) PREDICTED: spindlin-2A iso (258 aa)
initn: 1418 init1: 1283 opt: 1380 Z-score: 1667.7 bits: 316.2 E(85289): 3.7e-86
Smith-Waterman score: 1380; 76.4% identity (92.0% similar) in 263 aa overlap (1-262:1-258)
10 20 30 40 50
pF1KB3 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ
:::: .. . ::..:: ::.: :::: ::..:.::.:. .: ::::::::::::.
XP_005 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA
::::::. :.::::::::::::.::::::.::::.::::::::..:::: .:..: ::::
XP_005 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY
.:.::::.::.:.:::::::::: : ::::::::::::.::.:..:::::::::::::::
XP_005 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK
:::::::::::::::.:..:::.::::: :::.:.::.:::.::::::: ::::::::.:
XP_005 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVETK
180 190 200 210 220 230
240 250 260
pF1KB3 PSVYFIKFDDDFHIYVYDLVKTS
::::::::::::::::::::: :
XP_005 PSVYFIKFDDDFHIYVYDLVKKS
240 250
262 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:49:33 2016 done: Sat Nov 5 04:49:34 2016
Total Scan time: 6.140 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]