Result of FASTA (ccds) for
pF1KB3086
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3086, 580 aa
1>>>pF1KB3086 580 - 580 aa - 580 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2744+/-0.000764; mu= 15.7755+/- 0.047
mean_var=98.1457+/-19.330, 0's: 0 Z-trim(111.1): 10 B-trim: 0 in 0/53
Lambda= 0.129461
statistics sampled from 12126 (12135) to 12126 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.373), width: 16
Scan time: 3.650
The best scores are: opt bits E(32554)
CCDS14638.1 GPC3 gene_id:2719|Hs108|chrX ( 580) 3923 742.9 2.5e-214
CCDS55495.1 GPC3 gene_id:2719|Hs108|chrX ( 526) 3145 597.6 1.3e-170
CCDS55496.1 GPC3 gene_id:2719|Hs108|chrX ( 603) 2336 446.5 4.4e-125
CCDS9468.1 GPC5 gene_id:2262|Hs108|chr13 ( 572) 1524 294.9 1.9e-79
CCDS9469.1 GPC6 gene_id:10082|Hs108|chr13 ( 555) 687 138.5 2.1e-32
CCDS2534.1 GPC1 gene_id:2817|Hs108|chr2 ( 558) 632 128.2 2.6e-29
CCDS14637.1 GPC4 gene_id:2239|Hs108|chrX ( 556) 591 120.6 5.3e-27
CCDS5689.1 GPC2 gene_id:221914|Hs108|chr7 ( 579) 457 95.6 1.9e-19
>>CCDS14638.1 GPC3 gene_id:2719|Hs108|chrX (580 aa)
initn: 3923 init1: 3923 opt: 3923 Z-score: 3961.4 bits: 742.9 E(32554): 2.5e-214
Smith-Waterman score: 3923; 100.0% identity (100.0% similar) in 580 aa overlap (1-580:1-580)
10 20 30 40 50 60
pF1KB3 MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 LSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNAGKLTTTIGKLCAHSQQRQYRSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNAGKLTTTIGKLCAHSQQRQYRSA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 YYPEDLFIDKKVLKVAHVEHEETLSSRRRELIQKLKSFISFYSALPGYICSHSPVAENDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YYPEDLFIDKKVLKVAHVEHEETLSSRRRELIQKLKSFISFYSALPGYICSHSPVAENDT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 LCWNGQELVERYSQKAARNGMKNQFNLHELKMKGPEPVVSQIIDKLKHINQLLRTMSMPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LCWNGQELVERYSQKAARNGMKNQFNLHELKMKGPEPVVSQIIDKLKHINQLLRTMSMPK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 GRVLDKNLDEEGFESGDCGDDEDECIGGSGDGMIKVKNQLRFLAELAYDLDVDDAPGNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GRVLDKNLDEEGFESGDCGDDEDECIGGSGDGMIKVKNQLRFLAELAYDLDVDDAPGNSQ
490 500 510 520 530 540
550 560 570 580
pF1KB3 QATPKDNEISTFHNLGNVHSPLKLLTSMAISVVCFFFLVH
::::::::::::::::::::::::::::::::::::::::
CCDS14 QATPKDNEISTFHNLGNVHSPLKLLTSMAISVVCFFFLVH
550 560 570 580
>>CCDS55495.1 GPC3 gene_id:2719|Hs108|chrX (526 aa)
initn: 3553 init1: 3145 opt: 3145 Z-score: 3176.7 bits: 597.6 E(32554): 1.3e-170
Smith-Waterman score: 3449; 90.7% identity (90.7% similar) in 580 aa overlap (1-580:1-526)
10 20 30 40 50 60
pF1KB3 MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVP--
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR
::::::::
CCDS55 ----------------------------------------------------EAFEIVVR
60
130 140 150 160 170 180
pF1KB3 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
70 80 90 100 110 120
190 200 210 220 230 240
pF1KB3 QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB3 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYI
190 200 210 220 230 240
310 320 330 340 350 360
pF1KB3 LSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNAGKLTTTIGKLCAHSQQRQYRSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNAGKLTTTIGKLCAHSQQRQYRSA
250 260 270 280 290 300
370 380 390 400 410 420
pF1KB3 YYPEDLFIDKKVLKVAHVEHEETLSSRRRELIQKLKSFISFYSALPGYICSHSPVAENDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YYPEDLFIDKKVLKVAHVEHEETLSSRRRELIQKLKSFISFYSALPGYICSHSPVAENDT
310 320 330 340 350 360
430 440 450 460 470 480
pF1KB3 LCWNGQELVERYSQKAARNGMKNQFNLHELKMKGPEPVVSQIIDKLKHINQLLRTMSMPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LCWNGQELVERYSQKAARNGMKNQFNLHELKMKGPEPVVSQIIDKLKHINQLLRTMSMPK
370 380 390 400 410 420
490 500 510 520 530 540
pF1KB3 GRVLDKNLDEEGFESGDCGDDEDECIGGSGDGMIKVKNQLRFLAELAYDLDVDDAPGNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GRVLDKNLDEEGFESGDCGDDEDECIGGSGDGMIKVKNQLRFLAELAYDLDVDDAPGNSQ
430 440 450 460 470 480
550 560 570 580
pF1KB3 QATPKDNEISTFHNLGNVHSPLKLLTSMAISVVCFFFLVH
::::::::::::::::::::::::::::::::::::::::
CCDS55 QATPKDNEISTFHNLGNVHSPLKLLTSMAISVVCFFFLVH
490 500 510 520
>>CCDS55496.1 GPC3 gene_id:2719|Hs108|chrX (603 aa)
initn: 2336 init1: 2336 opt: 2336 Z-score: 2359.2 bits: 446.5 E(32554): 4.4e-125
Smith-Waterman score: 3867; 96.2% identity (96.2% similar) in 603 aa overlap (1-580:1-603)
10 20 30 40 50 60
pF1KB3 MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYI
250 260 270 280 290 300
310 320 330 340
pF1KB3 LSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNAGKLTTT----------------
::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNAGKLTTTETEKKIWHFKYPIFFL
310 320 330 340 350 360
350 360 370 380 390
pF1KB3 -------IGKLCAHSQQRQYRSAYYPEDLFIDKKVLKVAHVEHEETLSSRRRELIQKLKS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CIGLDLQIGKLCAHSQQRQYRSAYYPEDLFIDKKVLKVAHVEHEETLSSRRRELIQKLKS
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB3 FISFYSALPGYICSHSPVAENDTLCWNGQELVERYSQKAARNGMKNQFNLHELKMKGPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FISFYSALPGYICSHSPVAENDTLCWNGQELVERYSQKAARNGMKNQFNLHELKMKGPEP
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB3 VVSQIIDKLKHINQLLRTMSMPKGRVLDKNLDEEGFESGDCGDDEDECIGGSGDGMIKVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VVSQIIDKLKHINQLLRTMSMPKGRVLDKNLDEEGFESGDCGDDEDECIGGSGDGMIKVK
490 500 510 520 530 540
520 530 540 550 560 570
pF1KB3 NQLRFLAELAYDLDVDDAPGNSQQATPKDNEISTFHNLGNVHSPLKLLTSMAISVVCFFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NQLRFLAELAYDLDVDDAPGNSQQATPKDNEISTFHNLGNVHSPLKLLTSMAISVVCFFF
550 560 570 580 590 600
580
pF1KB3 LVH
:::
CCDS55 LVH
>>CCDS9468.1 GPC5 gene_id:2262|Hs108|chr13 (572 aa)
initn: 1570 init1: 1432 opt: 1524 Z-score: 1539.9 bits: 294.9 E(32554): 1.9e-79
Smith-Waterman score: 1524; 44.9% identity (75.1% similar) in 515 aa overlap (34-543:29-539)
10 20 30 40 50 60
pF1KB3 TVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQ-RLQPGLKWVPETPVPGSDL
::..::..:: :: ... .:..: : ::
CCDS94 MDAQTWPVGFRCLLLLALVGSARSEGVQTCEEVRKLFQWRLLGAVRGLPDSPRAGPDL
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 QVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHA
:::. : ::::.:::::.::..:: .:.:.::..: ::::: .:::.:::..: ....:
CCDS94 QVCISKKPTCCTRKMEERYQIAARQDMQQFLQTSSSTLKFLISRNAAAFQETLETLIKQA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 KNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQL
.:::. .: ..: ... .: : ::::::.::..:.:.: ...::..::::::..:..:
CCDS94 ENYTSILFCSTYRNMALEAAASVQEFFTDVGLYLFGADVNPEEFVNRFFDSLFPLVYNHL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 MNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINT
.:::. ::.:. .::.: ::::.. :::.:. .: :...:: .: ::::::::::::::
CCDS94 INPGVTDSSLEYSECIRMARRDVSPFGNIPQRVMGQMGRSLLPSRTFLQALNLGIEVINT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 TDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYILS
::.:.:::.:.: : .: :: .:::: ..::: ::: ::.::.: ..:.. .:. :: :
CCDS94 TDYLHFSKECSRALLKMQYCPHCQGLALTKPCMGYCLNVMRGCLAHMAELNPHWHAYIRS
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB3 LEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNAGKLTTTIGKLCAHSQQRQYRSAYY
:::: ..:. ::. .:::.. ..:.. .. :. :: ....:.. . .:
CCDS94 LEELSDAMHGTYDIGHVLLNFHLLVNDAVLQAHLNGQKLLEQVNRICGRPVRTPTQSPRC
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB3 PEDLFIDKKVLKVAHVEHEETLSSRRRELIQKLKSFISFYSALPGYICSHSPVAENDTLC
: .:. .:.. . ::::..::.:.:..:. . :::..: .:.. .: . :
CCDS94 SFDQSKEKHGMKTTTRNSEETLANRRKEFINSLRLYRSFYGGLADQLCANELAAADGLPC
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB3 WNGQELVERYSQKAARNGMKNQFNLHELKMKGPEPVVSQIIDKLKHINQLL--RTMSMPK
:::...:. :.:... ::.: : . :.:.:: .::..::::::::. ::: :. . :
CCDS94 WNGEDIVKSYTQRVVGNGIKAQSGNPEVKVKGIDPVINQIIDKLKHVVQLLQGRSPKPDK
420 430 440 450 460 470
490 500 510 520 530
pF1KB3 GRVLDKNLDEEGFE--SGDCGDDEDECIGGSGDGMIKVKNQLRFLAELAYDLDVDDAPGN
..:. . : :::: :::: : ::::.: .:: :.. . :.. .:.
CCDS94 WELLQLGSGGGMVEQVSGDC-DDEDGC-GGSGSG--EVKRTLKITDWMPDDMNFSDVKQI
480 490 500 510 520 530
540 550 560 570 580
pF1KB3 SQQATPKDNEISTFHNLGNVHSPLKLLTSMAISVVCFFFLVH
: :
CCDS94 HQTDTGSTLDTTGAGCAVATESMTFTLISVVMLLPGIW
540 550 560 570
>>CCDS9469.1 GPC6 gene_id:10082|Hs108|chr13 (555 aa)
initn: 609 init1: 338 opt: 687 Z-score: 695.2 bits: 138.5 E(32554): 2.1e-32
Smith-Waterman score: 690; 27.8% identity (59.3% similar) in 482 aa overlap (34-501:29-504)
10 20 30 40 50 60
pF1KB3 TVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGSDLQ
.: .::. . .: .: . : :.
CCDS94 MPSWIGAVILPLLGLLLSLPAGADVKARSCGEVRQAYGAKGFSLADIPYQEIAGEHLR
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 VCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAK
.: :. :::. .::.: . ..:..:.:.. .: .. ... :.: :. ....:.
CCDS94 IC-PQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRHKKFDEFFRELLENAE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 NYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQLM
. : :: .: : : : ..::... : :...:...:.:... :. .. ::.
CCDS94 KSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVNLEEMLNDFWARLLERMF-QLI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 NPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTT
:: : : ::. .:: ::. :. . ::.... ..: :.:.:..: :: : .
CCDS94 NPQYHFSE-DYLECVSKYTDQLKPFGDVPRKLKIQVTRAFIAARTFVQGLTVGREVANRV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 DHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYILSL
.... . : : : .: :: ::.:: :.::..:: ::.::.:. ...: : .: ..
CCDS94 SKVSPTPGCIRALMKMLYCPYCRGLPTVRPCNNYCLNVMKGCLANQADLDTEWNLFIDAM
240 250 260 270 280 290
310 320 330 340 350
pF1KB3 EELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNAGKLTTTIGKLCAHSQQ----RQYRS
... . ...:.:. . : ..:. .:.:. .... . . :.. . :. ::
CCDS94 LLVAERLEGPFNIESVMDPIDVKISEAIMNMQENSMQVSAKVFQGCGQPKPAPALRSARS
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB3 AYYPEDL---FIDKKVLKVAHVEHEETLSSRRRELIQKLKSFISFYSALPGYICSHSPVA
: ::.. : . . . .:. .. .::: . .:::: ::. :.
CCDS94 A--PENFNTRFRPYNPEERPTTAAGTSLDRLVTDIKEKLKLSKKVWSALPYTICKDESVT
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB3 E---NDTLCWNGQELVERYSQKAARNGMKNQFNLHELK--MKGPEPVVSQIIDKLKHINQ
:. ::::. . :: . .:. ::.: :. . :. . : : :. ...
CCDS94 AGTSNEEECWNGHSKA-RYLPEIMNDGLTNQINNPEVDVDITRPDTFIRQQIMALRVMTN
420 430 440 450 460 470
480 490 500 510 520
pF1KB3 LLRTMSMPKGRVLDKNLDEE-GFESGD-CGDDEDECIGGSGDGMIKVKNQLRFLAELAYD
:.. . .. . :: : ::. : ::
CCDS94 KLKNAYNGNDVNFQDTSDESSGSGSGSGCMDDVCPTEFEFVTTEAPAVDPDRREVDSSAA
480 490 500 510 520 530
530 540 550 560 570 580
pF1KB3 LDVDDAPGNSQQATPKDNEISTFHNLGNVHSPLKLLTSMAISVVCFFFLVH
CCDS94 QRGHSLLSWSLTCIVLALQRLCR
540 550
>>CCDS2534.1 GPC1 gene_id:2817|Hs108|chr2 (558 aa)
initn: 490 init1: 286 opt: 632 Z-score: 639.7 bits: 128.2 E(32554): 2.6e-29
Smith-Waterman score: 632; 25.0% identity (59.0% similar) in 488 aa overlap (24-501:21-497)
10 20 30 40 50 60
pF1KB3 MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS
:. : . .: .::... .:. ::.. . :
CCDS25 MELRARGWWLLCAAAALVACARGDPASKSRSCGEVRQIYGAKGFSLSDVPQAEISGE
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR
:..: :.: :::. .:::. .. ..: :...: :. .. . :.. :. ..
CCDS25 HLRIC-PQGYTCCTSEMEENLANRSHAELETALRDSSRVLQAMLATQLRSFDDHFQHLLN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
.. .: : . . : : . ...... :: :....... . :.. :. ..
CCDS25 DSERTLQATFPGAFGELYTQNARAFRDLYSELRLYYRGANLHLEETLAEFWARLLERLFK
120 130 140 150 160 170
190 200 210 220 230
pF1KB3 QLMNPGL--PDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIE
:: .: : ::. :: :: . :. ::. :. . ...... ..: :.:.:... .
CCDS25 QL-HPQLLLPDDYLD---CLGKQAEALRPFGEAPRELRLRATRAFVAARSFVQGLGVASD
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 VINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWRE
:. . .. .. .:.: . .. ::..: :. ..:: :: :..::.:. ...: ::.
CCDS25 VVRKVAQVPLGPECSRAVMKLVYCAHCLGVPGARPCPDYCRNVLKGCLANQADLDAEWRN
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB3 YILSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNAGKLTTTIGKLCAHSQQRQYR
. :. ... .. .:.:. .. . . ..:. .: : ::. . . :.. .
CCDS25 LLDSMVLITDKFWGTSGVESVIGSVHTWLAEAINALQDNRDTLTAKVIQGCGNPKVNPQG
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB3 SAYYPEDLFIDKKVLKVAHVEHEE--TLSSRRRELIQKLKSFISFYSALPGYICSHSPV-
. ::. .. :.: :. :: . : .:.. .:. .::: .::.. .
CCDS25 PG--PEE---KRRRGKLAPRERPPSGTLEKLVSEAKAQLRDVQDFWISLPGTLCSEKMAL
360 370 380 390 400
420 430 440 450 460 470
pF1KB3 -AENDTLCWNGQELVERYSQKAARNGMKNQFNLHELK--MKGPEPVVSQIIDKLKHINQL
. .: ::::. :: .. .:. ::.: :.. . :. .. : : .:: ...
CCDS25 STASDDRCWNGMAR-GRYLPEVMGDGLANQINNPEVEVDITKPDMTIRQQIMQLKIMTNR
410 420 430 440 450 460
480 490 500 510 520 530
pF1KB3 LRTMSMPKG-RVLDKNLDEEGFESGD-CGDDEDECIGGSGDGMIKVKNQLRFLAELAYDL
::. . : . : : ::: : ::
CCDS25 LRSAYNGNDVDFQDASDDGSGSGSGDGCLDDLCSRKVSRKSSSSRTPLTHALPGLSEQEG
470 480 490 500 510 520
540 550 560 570 580
pF1KB3 DVDDAPGNSQQATPKDNEISTFHNLGNVHSPLKLLTSMAISVVCFFFLVH
CCDS25 QKTSAASCPQPPTFLLPLLLFLALTVARPRWR
530 540 550
>>CCDS14637.1 GPC4 gene_id:2239|Hs108|chrX (556 aa)
initn: 421 init1: 256 opt: 591 Z-score: 598.3 bits: 120.6 E(32554): 5.3e-27
Smith-Waterman score: 636; 26.9% identity (60.7% similar) in 494 aa overlap (34-512:29-501)
10 20 30 40 50 60
pF1KB3 TVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGSDLQ
.: .:: .. . . .: . :. :.
CCDS14 MARFGLPALLCTLAVLSAALLAAELKSKSCSEVRRLYVSKGFNKNDAPLHEINGDHLK
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 VCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAK
.: :.: ::::..:::::.: .. ....... .:. .. . :.: :. ....:.
CCDS14 IC-PQGSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQAVFASRYKKFDEFFKELLENAE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 NYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQLM
. : :: ..: : : :. ..:.... : . ...:...:.:... :. .. .:.
CCDS14 KSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYVVGNVNLEEMLNDFWARLLERMF-RLV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 NPG--LPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVIN
: . : : ::. ..:: ::. :. . ::.... ..: : :.: .. .:..
CCDS14 NSQYHFTDEYL---ECVSKYTEQLKPFGDVPRKLKLQVTRAFVAARTFAQGLAVAGDVVS
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYIL
.. .. . .: . : .: :::.:.::. :::: .::. .:.::.:. ..: : ..:
CCDS14 KVSVVNPTAQCTHALLKMIYCSHCRGLVTVKPCYNYCSNIMRGCLANQGDLDFEWNNFID
240 250 260 270 280 290
310 320 330 340 350
pF1KB3 SLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNAGKLTTTIGKLCAHSQQ----RQY
.. ... . ...:.:. . : :.:. .: :. ... . . :. . :
CCDS14 AMLMVAERLEGPFNIESVMDPIDVKISDAIMNMQDNSVQVSQKVFQGCGPPKPLPAGRIS
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB3 RSAYYPEDLFIDKKVLKVAHVEHEETL---SSRRR---ELIQKLKSFISFYSALPGYICS
:: :. : . .. : :.. : .: : .. .:::. .:.:.::. .:.
CCDS14 RSI--SESAFSAR--FRPHHPEERPTTAAGTSLDRLVTDVKEKLKQAKKFWSSLPSNVCN
360 370 380 390 400
420 430 440 450 460
pF1KB3 HSPVAE---NDTLCWNGQELVERYSQKAARNGMKNQFNLHELKMKGPEPVVSQIIDKLKH
.: :. ::::. :: .. ::. :: : :... .: . .: :..
CCDS14 DERMAAGNGNEDDCWNGKGK-SRYLFAVTGNGLANQGNNPEVQVDTSKPDI--LI--LRQ
410 420 430 440 450 460
470 480 490 500 510 520
pF1KB3 INQLLRTMSMPKGRVLDKNLDEEGFESGDCGDDEDECIGGSGDGMIKVKNQLRFLAELAY
: . ::.:. . . : : . :. .: .. : :::.:
CCDS14 I-MALRVMTSKMKNAYNGN-DVDFFDISDESSGE-----GSGSGCEYQQCPSEFDYNATD
470 480 490 500 510
530 540 550 560 570 580
pF1KB3 DLDVDDAPGNSQQATPKDNEISTFHNLGNVHSPLKLLTSMAISVVCFFFLVH
CCDS14 HAGKSANEKADSAGVRPGAQAYLLTVFCILFLVMQREWR
520 530 540 550
>>CCDS5689.1 GPC2 gene_id:221914|Hs108|chr7 (579 aa)
initn: 103 init1: 71 opt: 457 Z-score: 462.8 bits: 95.6 E(32554): 1.9e-19
Smith-Waterman score: 490; 24.3% identity (54.1% similar) in 518 aa overlap (15-512:7-505)
10 20 30 40 50
pF1KB3 MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDA-----TCHQVRSFFQRLQPGLKWVPET
:: : .: : : : . .: ..:. . .:. .: .
CCDS56 MSALRPLLLLLLPLCPGPGPGPGSEAKVTRSCAETRQVLGARGYSLNLIPPA
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 PVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAF
. : :.:: :. :::: . :.. .. ... :..... : . :.: :
CCDS56 LISGEHLRVC-PQEYTCCSSETEQRLIRETEATFRGLVEDSGSFLVHTLAARHRKFDEFF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 EIVVRHAKNYTNAMFKNNYPSLTPQ-AFEFVGEFFTDVSLYIL---GSDINVDDMVNELF
.. :.. . .:...: : : :. : : : ..: : : .. :. .:.
CCDS56 LEMLSVAQHSLTQLFSHSYGRLYAQHALIFNGLFSRLRDFYGESGEGLDDTLADFWAQLL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 DSLFPVIYTQLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQ
. .::... : : :: : ... .. .:. ::. :. . :....: ..: :.:
CCDS56 ERVFPLLHPQYSFP--PDYLLCLSRLASSTDGSLQPFGDSPRRLRLQITRTLVAARAFVQ
180 190 200 210 220
240 250 260 270 280 290
pF1KB3 ALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGV-V
.:. : .:.. . .. :. :.. : :. : :.:. . :: :.: :..::... .
CCDS56 GLETGRNVVSEALKVPVSEGCSQALMRLIGCPLCRGVPSLMPCQGFCLNVVRGCLSSRGL
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB3 EIDKYWREYILSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNAGKLTTTIGKLCA
: : : .:. .: :.. . ...: . .. : ....:.:.:..:... . . :.
CCDS56 EPD--WGNYLDGLLILADKLQGPFSFELTAESIGVKISEGLMYLQENSAKVSAQVFQECG
290 300 310 320 330 340
360 370 380 390 400
pF1KB3 HSQQRQYRSAYYPEDLFIDKKVLKVAHVEHEETLSSRRR------ELIQKLKSFISFYSA
. :. : .. ... :.. : .. :: ..: . .:..
CCDS56 PPDPVPARNRRAPPPREEAGRLWSMVTEEERPTTAAGTNLHRLVWELRERLARMRGFWAR
350 360 370 380 390 400
410 420 430 440 450 460
pF1KB3 LPGYICSHSPVAENDTL----CWNGQELVERYSQKAARNGMKNQFNLHELKMKGPEPVVS
: .:. : .: . .: ::.: :: .. .. .: : :::. . : :
CCDS56 LSLTVCGDSRMAADASLEAAPCWTGAGR-GRYLPPVVGGSPAEQVNNPELKVDASGPDVP
410 420 430 440 450 460
470 480 490 500 510 520
pF1KB3 QIIDKLKHINQLLRTMSMPKGRVLDKNLDEEGFESGDCGDDEDECIGGSGDGMIKVKNQL
.: :: . . : .: ..:: :.: :: .::: :
CCDS56 TRRRRL----QLRAATARMKTAALGHDLD---------GQDADEDASGSGGGQQYADDWM
470 480 490 500 510
530 540 550 560 570 580
pF1KB3 RFLAELAYDLDVDDAPGNSQQATPKDNEISTFHNLGNVHSPLKLLTSMAISVVCFFFLVH
CCDS56 AGAVAPPARPPRPPYPPRRDGSGGKGGGGSARYNQGRSRSGGASIGFHTQTILILSLSAL
520 530 540 550 560 570
580 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:24:59 2016 done: Fri Nov 4 23:25:00 2016
Total Scan time: 3.650 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]