Result of FASTA (ccds) for
pF1KB3100
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3100, 856 aa
1>>>pF1KB3100 856 - 856 aa - 856 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.5748+/-0.00123; mu= -6.7712+/- 0.075
mean_var=666.5833+/-135.416, 0's: 0 Z-trim(116.4): 40 B-trim: 0 in 0/54
Lambda= 0.049676
statistics sampled from 17007 (17037) to 17007 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.523), width: 16
Scan time: 4.770
The best scores are: opt bits E(32554)
CCDS12576.1 HNRNPUL1 gene_id:11100|Hs108|chr19 ( 856) 6054 449.5 1.1e-125
CCDS82351.1 HNRNPUL1 gene_id:11100|Hs108|chr19 ( 767) 5376 400.9 4.5e-111
CCDS12577.1 HNRNPUL1 gene_id:11100|Hs108|chr19 ( 756) 5371 400.5 5.7e-111
CCDS41479.1 HNRNPU gene_id:3192|Hs108|chr1 ( 825) 1991 158.3 5e-38
CCDS31081.1 HNRNPU gene_id:3192|Hs108|chr1 ( 806) 1966 156.5 1.7e-37
CCDS41659.1 HNRNPUL2 gene_id:221092|Hs108|chr11 ( 747) 1692 136.8 1.3e-31
>>CCDS12576.1 HNRNPUL1 gene_id:11100|Hs108|chr19 (856 aa)
initn: 6054 init1: 6054 opt: 6054 Z-score: 2369.6 bits: 449.5 E(32554): 1.1e-125
Smith-Waterman score: 6054; 100.0% identity (100.0% similar) in 856 aa overlap (1-856:1-856)
10 20 30 40 50 60
pF1KB3 MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELDADDEPGRPGHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELDADDEPGRPGHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 NEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 RGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 YLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 SYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 CEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 IQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 RTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 AGPPPEKRFDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AGPPPEKRFDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 RSGGGGYSQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RSGGGGYSQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 RNPPGASTYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RNPPGASTYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 PPAYNYGSYGGYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PPAYNYGSYGGYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNY
790 800 810 820 830 840
850
pF1KB3 DYGSYSGNTQGGTSTQ
::::::::::::::::
CCDS12 DYGSYSGNTQGGTSTQ
850
>>CCDS82351.1 HNRNPUL1 gene_id:11100|Hs108|chr19 (767 aa)
initn: 5376 init1: 5376 opt: 5376 Z-score: 2107.6 bits: 400.9 E(32554): 4.5e-111
Smith-Waterman score: 5376; 100.0% identity (100.0% similar) in 757 aa overlap (100-856:11-767)
70 80 90 100 110 120
pF1KB3 SELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPL
::::::::::::::::::::::::::::::
CCDS82 MRSWAFSYLDAMDNITRQNQFYDTQVIKQENESGYERRPL
10 20 30 40
130 140 150 160 170 180
pF1KB3 EMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHRED
50 60 70 80 90 100
190 200 210 220 230 240
pF1KB3 RRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARAS
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB3 YGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGK
170 180 190 200 210 220
310 320 330 340 350 360
pF1KB3 KSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALY
230 240 250 260 270 280
370 380 390 400 410 420
pF1KB3 PHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGL
290 300 310 320 330 340
430 440 450 460 470 480
pF1KB3 PAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLN
350 360 370 380 390 400
490 500 510 520 530 540
pF1KB3 RLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEE
410 420 430 440 450 460
550 560 570 580 590 600
pF1KB3 GKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRKAGPPPEKRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRKAGPPPEKRF
470 480 490 500 510 520
610 620 630 640 650 660
pF1KB3 DNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQ
530 540 550 560 570 580
670 680 690 700 710 720
pF1KB3 NRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTY
590 600 610 620 630 640
730 740 750 760 770 780
pF1KB3 NKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSY
650 660 670 680 690 700
790 800 810 820 830 840
pF1KB3 GGYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNYDYGSYSGNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GGYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNYDYGSYSGNT
710 720 730 740 750 760
850
pF1KB3 QGGTSTQ
:::::::
CCDS82 QGGTSTQ
>>CCDS12577.1 HNRNPUL1 gene_id:11100|Hs108|chr19 (756 aa)
initn: 5371 init1: 5371 opt: 5371 Z-score: 2105.7 bits: 400.5 E(32554): 5.7e-111
Smith-Waterman score: 5371; 100.0% identity (100.0% similar) in 756 aa overlap (101-856:1-756)
80 90 100 110 120 130
pF1KB3 ELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLE
::::::::::::::::::::::::::::::
CCDS12 MDNITRQNQFYDTQVIKQENESGYERRPLE
10 20 30
140 150 160 170 180 190
pF1KB3 MEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB3 RGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASY
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB3 GVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKK
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB3 STNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 STNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYP
220 230 240 250 260 270
380 390 400 410 420 430
pF1KB3 HVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLP
280 290 300 310 320 330
440 450 460 470 480 490
pF1KB3 AAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNR
340 350 360 370 380 390
500 510 520 530 540 550
pF1KB3 LIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEG
400 410 420 430 440 450
560 570 580 590 600 610
pF1KB3 KDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRKAGPPPEKRFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRKAGPPPEKRFD
460 470 480 490 500 510
620 630 640 650 660 670
pF1KB3 NRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQN
520 530 540 550 560 570
680 690 700 710 720 730
pF1KB3 RWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYN
580 590 600 610 620 630
740 750 760 770 780 790
pF1KB3 KNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYG
640 650 660 670 680 690
800 810 820 830 840 850
pF1KB3 GYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNYDYGSYSGNTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNYDYGSYSGNTQ
700 710 720 730 740 750
pF1KB3 GGTSTQ
::::::
CCDS12 GGTSTQ
>>CCDS41479.1 HNRNPU gene_id:3192|Hs108|chr1 (825 aa)
initn: 1505 init1: 715 opt: 1991 Z-score: 796.1 bits: 158.3 E(32554): 5e-38
Smith-Waterman score: 2047; 46.9% identity (71.4% similar) in 734 aa overlap (10-695:86-798)
10 20 30
pF1KB3 MDVRRLKVNELREELQRRGLDT-RGLKAELAERLQAALE
: .:: ...:... : . ::.:. ::
CCDS41 GNGSLDLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEEEGISALDGDQMELGEENGAAGA
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB3 AEE-PDDERELDADDEPG-----RPGH--INEEVETEGGSELEGTAQPPPPGLQPHAEPG
:. : .:.: ..:: : . :. ...: : : . .: :: ::. : . .:
CCDS41 ADSGPMEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQ-QQQPQ
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB3 GYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAP
: .. : . . .... . : ..: .:: . . . . : :
CCDS41 QQRGA-AKEAAGKSSGPTSLFAVTVAPPGARQG--------QQQAGGKKKAEGGGGGGRP
180 190 200 210 220
160 170 180 190 200
pF1KB3 TSFLPPEASQLKPDRQQFQSR---KRPYEENRGRGYFEHREDR---RGRSPQPPAEEDED
. : :.. : ... ... ::: .:..::::::. :. :..:::::.::...
CCDS41 GA---PAAGDGKTEQKGGDKKRGVKRP-REDHGRGYFEYIEENKYSRAKSPQPPVEEEDE
230 240 250 260 270 280
210 220 230 240 250 260
pF1KB3 DFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKIN
::::.: .::::::::::..::: :. ::.:.::.::.:.:::::: .:.::::::..
CCDS41 HFDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVT
290 300 310 320 330 340
270 280 290 300 310 320
pF1KB3 EEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFA
:.: :.:: . . : : ::::::: . . :::: :::::. : :. : . :.::.::
CCDS41 EKIPVRHLYTKDIDIHEVRIGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFD
350 360 370 380 390 400
330 340 350 360 370 380
pF1KB3 ENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFG
::::: :::.:: ...::::..:::. .:.::.:.::.:.:. :.:::: .:::::::::
CCDS41 ENDVITCFANFE-SDEVELSYAKNGQDLGVAFKISKEVLAGRPLFPHVLCHNCAVEFNFG
410 420 430 440 450 460
390 400 410 420 430 440
pF1KB3 QRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAAS
:. .:: . .::::..:: .:.:: ::. : .::..::.:::.::::::. ::::
CCDS41 QKEKPYFPIPEEYTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAE
470 480 490 500 510 520
450 460 470 480 490 500
pF1KB3 NPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYIL
::.: :::::::.::::: : :...: .:. ..:.:.: :::...:.::::::::.::
CCDS41 NPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFIL
530 540 550 560 570
510 520 530 540 550 560
pF1KB3 DQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKAN
::::: ..:::::: : ::::::.:.:: ::: :.:: :... ::::.:.::::.::.:
CCDS41 DQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGN
580 590 600 610 620 630
570 580 590 600 610
pF1KB3 FTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRKAGPPPEK-----RFDNRG------
::::.:.. .::. ..:::.:::.::..::.::..:: :: .: . .:..
CCDS41 FTLPEVAECFDEITYVELQKEEAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQ
640 650 660 670 680 690
620 630 640 650 660
pF1KB3 ---GGGFRGRGG----GGGFQRYENRGPPGGNRGGFQ------NRGGGSGGGGNYRGGFN
::: ::::: ::.: :: :::::.. .::::.::.:. .
CCDS41 FNRGGGHRGRGGFNMRGGNF-----RGGAPGNRGGYNRRGNMPQRGGGGGGSGGIGYPYP
700 710 720 730 740 750
670 680 690 700 710
pF1KB3 RS----GGGGYSQ----NRWGNNNRDNNNSNNRG-SYNRAPQQQPPPQQPPPPQPPPQQP
:. : :.::. :: : :: : :.: :: . ::. ..:
CCDS41 RAPVFPGRGSYSNRGNYNRGGMPNRGNYNQNFRGRGNNRGYKNQSQGYNQWQQGQFWGQK
760 770 780 790 800 810
720 730 740 750 760 770
pF1KB3 PPPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGY
CCDS41 PWSQHYHQGYY
820
>>CCDS31081.1 HNRNPU gene_id:3192|Hs108|chr1 (806 aa)
initn: 1505 init1: 715 opt: 1966 Z-score: 786.6 bits: 156.5 E(32554): 1.7e-37
Smith-Waterman score: 2065; 47.1% identity (69.4% similar) in 762 aa overlap (20-695:25-779)
10 20 30 40
pF1KB3 MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEE----PDDER---EL
:. .:::::: :::::::. :: : : :
CCDS31 MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRPAMEPGNGSL
10 20 30 40 50 60
50 60 70 80 90
pF1KB3 D-ADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPH-------AEPGGYSGP--DGH
: . : :: : :. . ::.: : . :.. .: .: .: .:
CCDS31 DLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEEEGISALDGDQMELGEENGAAGAADSGP
70 80 90 100 110 120
100 110 120 130 140
pF1KB3 YAMDNITRQNQFYDTQVIKQ-ENESGYERR---------------PLEMEQQ-QAYRPEM
. .. . ... : : ... :.: : :.. : ..:: : :
CCDS31 MEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAA
130 140 150 160 170 180
150 160 170 180
pF1KB3 KTEM-KQGAPTSFL-----PPEASQLKPD-------RQQFQSRKRPYE---ENRGRGYFE
: :...:::.. :: : : . . .:. ..:: . :..::::::
CCDS31 KEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGDGKTEQKGGDKKRGVKRPREDHGRGYFE
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB3 HREDR---RGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYL
. :. :..:::::.::... ::::.: .::::::::::..::: :. ::.:.::.:
CCDS31 YIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFAFL
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB3 WSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSY
:.:.:::::: .:.::::::..:.: :.:: . . : : ::::::: . . :::: :::
CCDS31 WAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGMLLGEEEFSY
310 320 330 340 350 360
310 320 330 340 350 360
pF1KB3 GYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEA
::. : :. : . :.::.:: ::::: :::.:: ...::::..:::. .:.::.:.::.
CCDS31 GYSLKGIKTCNCETEDYGEKFDENDVITCFANFE-SDEVELSYAKNGQDLGVAFKISKEV
370 380 390 400 410
370 380 390 400 410 420
pF1KB3 LGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECE
:.:. :.:::: .::::::::::. .:: . .::::..:: .:.:: ::. : .::
CCDS31 LAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVPLEDRVRGPKGPEEKKDCE
420 430 440 450 460 470
430 440 450 460 470 480
pF1KB3 ILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQ
..::.:::.::::::. :::: ::.: :::::::.::::: : :...: .:. ..:.:
CCDS31 VVMMIGLPGAGKTTWVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQ
480 490 500 510 520 530
490 500 510 520 530 540
pF1KB3 QATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRT
.: :::...:.::::::::.::::::: ..:::::: : ::::::.:.:: ::: :.::
CCDS31 RAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRT
540 550 560 570 580 590
550 560 570 580 590 600
pF1KB3 IKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRKAG
:... ::::.:.::::.::.:::::.:.. .::. ..:::.:::.::..::.::..::
CCDS31 QKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKLLEQYKEESKKAL
600 610 620 630 640 650
610 620 630 640
pF1KB3 PPPEK-----RFDNRG---------GGGFRGRGG----GGGFQRYENRGPPGGNRGGFQ-
:: .: . .:.. ::: ::::: ::.: :: :::::..
CCDS31 PPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNF-----RGGAPGNRGGYNR
660 670 680 690 700 710
650 660 670 680
pF1KB3 -----NRGGGSGGGGNYRGGFNRS----GGGGYSQ----NRWGNNNRDNNNSNNRG-SYN
.::::.::.:. . :. : :.::. :: : :: : :.: :: . :
CCDS31 RGNMPQRGGGGGGSGGIGYPYPRAPVFPGRGSYSNRGNYNRGGMPNRGNYNQNFRGRGNN
720 730 740 750 760 770
690 700 710 720 730 740
pF1KB3 RAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTVSS
:. ..:
CCDS31 RGYKNQSQGYNQWQQGQFWGQKPWSQHYHQGYY
780 790 800
>>CCDS41659.1 HNRNPUL2 gene_id:221092|Hs108|chr11 (747 aa)
initn: 1717 init1: 986 opt: 1692 Z-score: 680.8 bits: 136.8 E(32554): 1.3e-31
Smith-Waterman score: 1830; 43.1% identity (66.7% similar) in 744 aa overlap (1-695:1-733)
10 20 30 40 50
pF1KB3 MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDER---------ELDAD
:.:.::::.::: ::::::::.::::..::.::: ::.:: .:: :.
CCDS41 MEVKRLKVTELRSELQRRGLDSRGLKVDLAQRLQEALDAEMLEDEAGGGGAGPGGACKAE
10 20 30 40 50 60
60 70 80 90 100
pF1KB3 DEP-----GRPGHINEEVETEGGSE----LEGTAQPPPPG--LQPHAEPGGYSGPDGHYA
.: : :: .:: : : . :: . :::. : :.: : :
CCDS41 PRPVAASGGGPGGDEEEDEEEEEEDEEALLEDEDEEPPPAQALGQAAQPPPE--PPEAAA
70 80 90 100 110
110 120 130 140 150
pF1KB3 MDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQG--APTSFLPPE-
:. .. :.. : .: :: . : : . : ..: .: : .: .
CCDS41 MEAAAEP----DASEKPAEATAGSGGVNGGEEQGLGKREEDEPEERSGDETPGSEVPGDK
120 130 140 150 160 170
160 170 180 190 200
pF1KB3 ASQLKPDRQQFQS--------------RKRPYEENRGRGYFEHRED---RRGRSPQPPAE
:.. . : :. .. :.: ....::.:.: ::. :..:: :: :
CCDS41 AAEEQGDDQDSEKSKPAGSDGERRGVKRQRDEKDEHGRAYYEFREEAYHSRSKSPLPPEE
180 190 200 210 220 230
210 220 230 240 250
pF1KB3 EDEDDFDD-TLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCF
: .:. .: ::: .:::. ::::.:..:: .: :: : : ::::::..::: .:.:::
CCDS41 EAKDEEEDQTLVNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCF
240 250 260 270 280 290
260 270 280 290 300 310
pF1KB3 EMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENY
: :..... .:. :: . ..:.:::.: ::::. ::::. : : :. :..::..
CCDS41 EAKVTQNLPMKE-GCTEVS--LLRVGWSVDFSRPQLGEDEFSYGFDGRGLKAENGQFEEF
300 310 320 330 340 350
320 330 340 350 360 370
pF1KB3 GDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAV
:. :.:::::::::.:: ..:::::.:::. .:.:: :.:..:. .:: :::: :::.:
CCDS41 GQTFGENDVIGCFANFET-EEVELSFSKNGEDLGVAFWISKDSLADRALLPHVLCKNCVV
360 370 380 390 400 410
380 390 400 410 420 430
pF1KB3 EFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAI
:.::::. ::. :.::. .:. ::.: .: ::. :::...:::::..::: ::.
CCDS41 ELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPKTIEECEVILMVGLPGSGKTQWAL
420 430 440 450 460 470
440 450 460 470 480 490
pF1KB3 KHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKK
:.: :: :.::.::.......::. ::.. . :.:.:::.:::..:.:::.: :
CCDS41 KYAKENPEKRYNVLGAETVLNQMRMKGLEEPEMDPKSRDLLVQQASQCLSKLVQIASRTK
480 490 500 510 520 530
500 510 520 530 540 550
pF1KB3 RNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVL
::.:::: :::.:.::::. :. :.::..:. :..:: : : : . :: :::. .:
CCDS41 RNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKKRLELRKEVEGDDVPESIML
540 550 560 570 580 590
560 570 580 590 600 610
pF1KB3 EMKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGGFRG
::::::.::. :..::: . ::..:::. .: .:.::.:: :: ::: . :.. . :.
CCDS41 EMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYKEEARKLLPPSEKRTNRRNNRNKRN
600 610 620 630 640 650
620 630 640 650 660 670
pF1KB3 R-----GGG--GGFQR-YENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQNR
: : : :: .: :.::. : :::: . ::: ..: : : ::
CCDS41 RQNRSRGQGYVGGQRRGYDNRAYGQQYWGQPGNRGGYRNFYDRYRGDYDRFYGRDYEYNR
660 670 680 690 700 710
680 690 700 710 720 730
pF1KB3 WGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNK
. . :. : . .. : . ::..
CCDS41 YRDYYRQYNR-DWQSYYYHHPQDRDRYYRNYYGYQGYR
720 730 740
856 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:23:05 2016 done: Thu Nov 3 12:23:06 2016
Total Scan time: 4.770 Total Display time: 0.150
Function used was FASTA [36.3.4 Apr, 2011]