Result of FASTA (ccds) for
pF1KB3103
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3103, 550 aa
1>>>pF1KB3103 550 - 550 aa - 550 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3885+/-0.00122; mu= 2.0844+/- 0.073
mean_var=263.5697+/-55.661, 0's: 0 Z-trim(110.5): 85 B-trim: 581 in 2/50
Lambda= 0.079000
statistics sampled from 11613 (11686) to 11613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.359), width: 16
Scan time: 2.840
The best scores are: opt bits E(32554)
CCDS41680.1 CTTN gene_id:2017|Hs108|chr11 ( 550) 3706 435.9 5.9e-122
CCDS8197.1 CTTN gene_id:2017|Hs108|chr11 ( 513) 2574 306.9 3.9e-83
CCDS53676.1 CTTN gene_id:2017|Hs108|chr11 ( 634) 2489 297.3 3.7e-80
CCDS3003.1 HCLS1 gene_id:3059|Hs108|chr3 ( 486) 1111 140.1 5.8e-33
CCDS77800.1 HCLS1 gene_id:3059|Hs108|chr3 ( 449) 914 117.6 3.1e-26
>>CCDS41680.1 CTTN gene_id:2017|Hs108|chr11 (550 aa)
initn: 3706 init1: 3706 opt: 3706 Z-score: 2303.0 bits: 435.9 E(32554): 5.9e-122
Smith-Waterman score: 3706; 100.0% identity (100.0% similar) in 550 aa overlap (1-550:1-550)
10 20 30 40 50 60
pF1KB3 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKDYVKGFGGKFGVQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKDYVKGFGGKFGVQT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 DRQDKCALGWDHQEKLQLHESQKDYKTGFGGKFGVQSERQDSAAVGFDYKEKLAKHESQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DRQDKCALGWDHQEKLQLHESQKDYKTGFGGKFGVQSERQDSAAVGFDYKEKLAKHESQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 DYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAKE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 KEQEDRRKAEAERAQRMAKERQEQEEARRKLEEQARAKTQTPPVSPAPQPTEERLPSSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KEQEDRRKAEAERAQRMAKERQEQEEARRKLEEQARAKTQTPPVSPAPQPTEERLPSSPV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 YEDAASFKAELSYRGPVSGTEPEPVYSMEAADYREASSQQGLAYATEAVYESAEAPGHYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YEDAASFKAELSYRGPVSGTEPEPVYSMEAADYREASSQQGLAYATEAVYESAEAPGHYP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 AEDSTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AEDSTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGL
490 500 510 520 530 540
550
pF1KB3 FPANYVELRQ
::::::::::
CCDS41 FPANYVELRQ
550
>>CCDS8197.1 CTTN gene_id:2017|Hs108|chr11 (513 aa)
initn: 2739 init1: 2544 opt: 2574 Z-score: 1606.1 bits: 306.9 E(32554): 3.9e-83
Smith-Waterman score: 3375; 93.3% identity (93.3% similar) in 550 aa overlap (1-550:1-513)
10 20 30 40 50 60
pF1KB3 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKDYVKGFGGKFGVQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKDYVKGFGGKFGVQT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 DRQDKCALGWDHQEKLQLHESQKDYKTGFGGKFGVQSERQDSAAVGFDYKEKLAKHESQQ
:::::::::::::::::::::::::
CCDS81 DRQDKCALGWDHQEKLQLHESQKDY-----------------------------------
250 260
310 320 330 340 350 360
pF1KB3 DYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 --SKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAKE
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB3 KEQEDRRKAEAERAQRMAKERQEQEEARRKLEEQARAKTQTPPVSPAPQPTEERLPSSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KEQEDRRKAEAERAQRMAKERQEQEEARRKLEEQARAKTQTPPVSPAPQPTEERLPSSPV
330 340 350 360 370 380
430 440 450 460 470 480
pF1KB3 YEDAASFKAELSYRGPVSGTEPEPVYSMEAADYREASSQQGLAYATEAVYESAEAPGHYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 YEDAASFKAELSYRGPVSGTEPEPVYSMEAADYREASSQQGLAYATEAVYESAEAPGHYP
390 400 410 420 430 440
490 500 510 520 530 540
pF1KB3 AEDSTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AEDSTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGL
450 460 470 480 490 500
550
pF1KB3 FPANYVELRQ
::::::::::
CCDS81 FPANYVELRQ
510
>>CCDS53676.1 CTTN gene_id:2017|Hs108|chr11 (634 aa)
initn: 5172 init1: 2447 opt: 2489 Z-score: 1552.5 bits: 297.3 E(32554): 3.7e-80
Smith-Waterman score: 3290; 92.9% identity (93.1% similar) in 538 aa overlap (1-538:1-501)
10 20 30 40 50 60
pF1KB3 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKDYVKGFGGKFGVQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKDYVKGFGGKFGVQT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 DRQDKCALGWDHQEKLQLHESQKDYKTGFGGKFGVQSERQDSAAVGFDYKEKLAKHESQQ
:::::::::::::::::::::::::
CCDS53 DRQDKCALGWDHQEKLQLHESQKDY-----------------------------------
250 260
310 320 330 340 350 360
pF1KB3 DYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 --SKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAKE
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB3 KEQEDRRKAEAERAQRMAKERQEQEEARRKLEEQARAKTQTPPVSPAPQPTEERLPSSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KEQEDRRKAEAERAQRMAKERQEQEEARRKLEEQARAKTQTPPVSPAPQPTEERLPSSPV
330 340 350 360 370 380
430 440 450 460 470 480
pF1KB3 YEDAASFKAELSYRGPVSGTEPEPVYSMEAADYREASSQQGLAYATEAVYESAEAPGHYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YEDAASFKAELSYRGPVSGTEPEPVYSMEAADYREASSQQGLAYATEAVYESAEAPGHYP
390 400 410 420 430 440
490 500 510 520 530 540
pF1KB3 AEDSTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS53 AEDSTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRFRE
450 460 470 480 490 500
550
pF1KB3 FPANYVELRQ
CCDS53 LAFSCVRVALVPIKCSRDLPGQARGLRSALWRVGRKDCPRRGASSRVSLLGRRGLGLMEV
510 520 530 540 550 560
>>CCDS3003.1 HCLS1 gene_id:3059|Hs108|chr3 (486 aa)
initn: 1992 init1: 1049 opt: 1111 Z-score: 705.3 bits: 140.1 E(32554): 5.8e-33
Smith-Waterman score: 1349; 42.4% identity (65.9% similar) in 549 aa overlap (1-548:1-484)
10 20 30 40 50 60
pF1KB3 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
:::. .:: ::.. . : :::.::::::::.:::::::::::..:::. ::::::.::.
CCDS30 MWKSVVGHDVSVSVETQG-DDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRN
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
.: .::..:..::.:.::::::::::.::::.:::::::::::: ... :: ::.:...:
CCDS30 KVSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
::::.::. ::.:.:::::.:.:..:::.:::::: ::::.:::. :. ::.:.:.::.:
CCDS30 FGGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKG
120 130 140 150 160 170
190 200 210 220 230
pF1KB3 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGF-EYQGKTEKHESQKDYVKGFGGKFGVQ
.::::::::::.:::::.:::.::.:::::::: :... : ... . .: :..
CCDS30 ETEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGTRGLK
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 TDRQDKCALGWDHQEKLQLHESQKDYKTGFGGKFGVQSERQDSAAVGFDYKEKLAKHESQ
. .. .:: . .: .: . : ..:. :: : . . :
CCDS30 AKFESMA------EEKRKREEEEKAQQ--------VARRQQERKAV-----TKRSPEAPQ
240 250 260 270 280
300 310 320 330 340 350
pF1KB3 QDYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAK
. :.. : ..:: : . .:.. .:.. :. .
CCDS30 PVIA-------------MEEPAVPAPLPKKISSEAWPPVGTPP-SSESEPVRTSREHPVP
290 300 310 320
360 370 380 390 400 410
pF1KB3 EKEQEDRRKAEAERAQRMAKERQEQEEARRKLEEQARAKTQTPPVSPAPQPTEERLPSSP
.. . :. . . : ... :: . : : :.: ..
CCDS30 LLPIRQTLPEDNEEPPALPPRTLEGLQVE---EEPVYEAEPEPEPEPEPEPEND------
330 340 350 360 370
420 430 440 450 460 470
pF1KB3 VYEDAASFKAELSYRGPVSGTEPEPVYSMEAADYREASSQQGLAYATEAVYESAEAPGHY
:::. :.. . : :: .::.:. . .... :. :. :.
CCDS30 -YEDVE----EMDRHEQ----EDEP-----EGDYEEVLEPEDSSFSS-ALAGSSGCPAGA
380 390 400 410 420
480 490 500 510 520 530
pF1KB3 PAEDSTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYG
: . :::.:::.::::. :.::.::::::.::.:::.:.::::: :.:..:
CCDS30 GAGAVA-------LGISAVAVYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFG
430 440 450 460 470
540 550
pF1KB3 LFPANYVELRQ
:::::::.:
CCDS30 LFPANYVKLLE
480
>>CCDS77800.1 HCLS1 gene_id:3059|Hs108|chr3 (449 aa)
initn: 1591 init1: 851 opt: 914 Z-score: 584.4 bits: 117.6 E(32554): 3.1e-26
Smith-Waterman score: 1095; 38.0% identity (61.1% similar) in 548 aa overlap (1-548:1-447)
10 20 30 40 50 60
pF1KB3 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
:::. .:: ::.. . : :::.::::::::.:::::::::::..:::. ::::::.::.
CCDS77 MWKSVVGHDVSVSVETQG-DDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRN
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
.: .::..:..::.:.::::::::::.::::.:::::::::::: ... :: ::.:...:
CCDS77 KVSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
::::.::. ::.:.:::::.:.:..:::.:::::..::::.::.: ::::::::::.
CCDS77 FGGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYAKGFGGQYGIQKDRVDKSAVGFN---
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKDYVKGFGGKFGVQT
... ..... :: :. .. ..:. .:: ..
CCDS77 ------------------------EMEAPTTAYK---KTTPIEAASSGTRGLKAKFESMA
180 190 200
250 260 270 280 290 300
pF1KB3 DRQDKCALGWDHQEKLQLHESQKDYKTGFGGKFGVQSERQDSAAVGFDYKEKLAKHESQQ
... : ...:: : : ..:. :: : . . :
CCDS77 EEKRK----REEEEKAQQ----------------VARRQQERKAV-----TKRSPEAPQP
210 220 230 240
310 320 330 340 350 360
pF1KB3 DYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAKE
. :.. : ..:: : . .:.. .:.. :. .
CCDS77 VIA-------------MEEPAVPAPLPKKISSEAWPPVGTPP-SSESEPVRTSREHPVPL
250 260 270 280 290
370 380 390 400 410 420
pF1KB3 KEQEDRRKAEAERAQRMAKERQEQEEARRKLEEQARAKTQTPPVSPAPQPTEERLPSSPV
.. . :. . . : ... :: . : : :.: ..
CCDS77 LPIRQTLPEDNEEPPALPPRTLEGLQVE---EEPVYEAEPEPEPEPEPEPEND-------
300 310 320 330 340
430 440 450 460 470 480
pF1KB3 YEDAASFKAELSYRGPVSGTEPEPVYSMEAADYREASSQQGLAYATEAVYESAEAPGHYP
:::. :.. . : :: .::.:. . .... :. :. :.
CCDS77 YEDVE----EMDRHEQ----EDEP-----EGDYEEVLEPEDSSFSS-ALAGSSGCPAGAG
350 360 370 380
490 500 510 520 530 540
pF1KB3 AEDSTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGL
: . :::.:::.::::. :.::.::::::.::.:::.:.::::: :.:..::
CCDS77 AGAVA-------LGISAVAVYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFGL
390 400 410 420 430
550
pF1KB3 FPANYVELRQ
::::::.:
CCDS77 FPANYVKLLE
440
550 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:53:27 2016 done: Fri Nov 4 23:53:28 2016
Total Scan time: 2.840 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]