Result of FASTA (ccds) for
pF1KB3111
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3111, 361 aa
1>>>pF1KB3111 361 - 361 aa - 361 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2071+/-0.00097; mu= 7.2697+/- 0.058
mean_var=100.8998+/-20.378, 0's: 0 Z-trim(107.8): 53 B-trim: 504 in 1/51
Lambda= 0.127682
statistics sampled from 9762 (9806) to 9762 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.301), width: 16
Scan time: 2.850
The best scores are: opt bits E(32554)
CCDS55830.1 PCBP2 gene_id:5094|Hs108|chr12 ( 361) 2352 443.7 1.2e-124
CCDS8859.1 PCBP2 gene_id:5094|Hs108|chr12 ( 362) 2340 441.4 5.5e-124
CCDS44901.1 PCBP2 gene_id:5094|Hs108|chr12 ( 365) 2334 440.3 1.2e-123
CCDS44900.1 PCBP2 gene_id:5094|Hs108|chr12 ( 366) 2322 438.1 5.6e-123
CCDS1898.1 PCBP1 gene_id:5093|Hs108|chr2 ( 356) 1864 353.8 1.3e-97
CCDS44904.1 PCBP2 gene_id:5094|Hs108|chr12 ( 318) 1246 239.9 2.3e-63
CCDS44903.1 PCBP2 gene_id:5094|Hs108|chr12 ( 331) 1246 239.9 2.3e-63
CCDS44902.1 PCBP2 gene_id:5094|Hs108|chr12 ( 335) 1228 236.6 2.4e-62
CCDS42974.2 PCBP3 gene_id:54039|Hs108|chr21 ( 371) 1101 213.2 2.9e-55
CCDS46652.1 PCBP3 gene_id:54039|Hs108|chr21 ( 345) 932 182.1 6.3e-46
CCDS2839.1 PCBP4 gene_id:57060|Hs108|chr3 ( 403) 855 167.9 1.3e-41
CCDS2840.2 PCBP4 gene_id:57060|Hs108|chr3 ( 360) 538 109.5 4.6e-24
>>CCDS55830.1 PCBP2 gene_id:5094|Hs108|chr12 (361 aa)
initn: 2352 init1: 2352 opt: 2352 Z-score: 2351.4 bits: 443.7 E(32554): 1.2e-124
Smith-Waterman score: 2352; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS
310 320 330 340 350 360
pF1KB3 S
:
CCDS55 S
>>CCDS8859.1 PCBP2 gene_id:5094|Hs108|chr12 (362 aa)
initn: 2338 init1: 1819 opt: 2340 Z-score: 2339.4 bits: 441.4 E(32554): 5.5e-124
Smith-Waterman score: 2340; 99.7% identity (99.7% similar) in 362 aa overlap (1-361:1-362)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLT
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHELTIPNDLIGCII
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS88 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCII
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMG
310 320 330 340 350 360
360
pF1KB3 SS
::
CCDS88 SS
>>CCDS44901.1 PCBP2 gene_id:5094|Hs108|chr12 (365 aa)
initn: 1288 init1: 1288 opt: 2334 Z-score: 2333.4 bits: 440.3 E(32554): 1.2e-123
Smith-Waterman score: 2334; 98.9% identity (98.9% similar) in 365 aa overlap (1-361:1-365)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE----SPPKGVTI
:::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS44 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 PYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 CIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETG
310 320 330 340 350 360
360
pF1KB3 GMGSS
:::::
CCDS44 GMGSS
>>CCDS44900.1 PCBP2 gene_id:5094|Hs108|chr12 (366 aa)
initn: 1733 init1: 1068 opt: 2322 Z-score: 2321.4 bits: 438.1 E(32554): 5.6e-123
Smith-Waterman score: 2322; 98.6% identity (98.6% similar) in 366 aa overlap (1-361:1-366)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE----SPPKGVTI
:::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS44 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 PYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHELTIPNDLI
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS44 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLI
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET
310 320 330 340 350 360
360
pF1KB3 GGMGSS
::::::
CCDS44 GGMGSS
>>CCDS1898.1 PCBP1 gene_id:5093|Hs108|chr2 (356 aa)
initn: 1846 init1: 1017 opt: 1864 Z-score: 1865.6 bits: 353.8 E(32554): 1.3e-97
Smith-Waterman score: 1864; 81.5% identity (91.0% similar) in 367 aa overlap (1-361:1-356)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
CCDS18 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
:.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
CCDS18 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VT
::::::::::::::::::::::::::::::.:::. :::::::.::::. :.: .:
CCDS18 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 IPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIP
:::.: :.::::: :::::: ::.:..::.: :::::::.::.::::..:
CCDS18 IPYQPMPASSPVICAGGQDRC---SDAAGYPHATH------DLEGPPLDAYSIQGQHTIS
190 200 210 220 230
240 250 260 270 280 290
pF1KB3 QPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWG-LDASAQTTSHELTIPNDL
::.::.:.: ::::: : ::.:::.::.::::::::::. ::::.::: :::::::.:
CCDS18 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB3 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE
::::::::::.:::::::::::::::::::::. ::::::::::::::::::::.:::::
CCDS18 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE
300 310 320 330 340 350
360
pF1KB3 TGGMGSS
: :: :
CCDS18 KG-MGCS
>>CCDS44904.1 PCBP2 gene_id:5094|Hs108|chr12 (318 aa)
initn: 1765 init1: 1246 opt: 1246 Z-score: 1251.2 bits: 239.9 E(32554): 2.3e-63
Smith-Waterman score: 1932; 87.8% identity (88.1% similar) in 361 aa overlap (1-361:1-318)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLT
::::::::::::: ::::::::::::::::
CCDS44 KPSSSPVIFAGGQ-------------------------------AYTIQGQYAIPQPDLT
190 200
250 260 270 280 290 300
pF1KB3 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIG
::::::::::::::::::::::. :::::::::::::::::::::::::
CCDS44 KLHQLAMQQSHFPMTHGNTGFSA------------GLDASAQTTSHELTIPNDLIGCIIG
210 220 230 240 250
310 320 330 340 350 360
pF1KB3 RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS
260 270 280 290 300 310
pF1KB3 S
:
CCDS44 S
>>CCDS44903.1 PCBP2 gene_id:5094|Hs108|chr12 (331 aa)
initn: 1761 init1: 1242 opt: 1246 Z-score: 1250.9 bits: 239.9 E(32554): 2.3e-63
Smith-Waterman score: 2046; 91.2% identity (91.2% similar) in 362 aa overlap (1-361:1-331)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLT
::::::::::::: ::::::::::::::::
CCDS44 KPSSSPVIFAGGQ-------------------------------AYTIQGQYAIPQPDLT
190 200
250 260 270 280 290
pF1KB3 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHELTIPNDLIGCII
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS44 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCII
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB3 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMG
270 280 290 300 310 320
360
pF1KB3 SS
::
CCDS44 SS
330
>>CCDS44902.1 PCBP2 gene_id:5094|Hs108|chr12 (335 aa)
initn: 2054 init1: 1068 opt: 1228 Z-score: 1232.9 bits: 236.6 E(32554): 2.4e-62
Smith-Waterman score: 2028; 90.2% identity (90.2% similar) in 366 aa overlap (1-361:1-335)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE----SPPKGVTI
:::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS44 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 PYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQ
::::::::::::::::: ::::::::::::
CCDS44 PYRPKPSSSPVIFAGGQ-------------------------------AYTIQGQYAIPQ
190 200
240 250 260 270 280 290
pF1KB3 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHELTIPNDLI
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS44 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLI
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB3 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET
270 280 290 300 310 320
360
pF1KB3 GGMGSS
::::::
CCDS44 GGMGSS
330
>>CCDS42974.2 PCBP3 gene_id:54039|Hs108|chr21 (371 aa)
initn: 1591 init1: 1099 opt: 1101 Z-score: 1105.8 bits: 213.2 E(32554): 2.9e-55
Smith-Waterman score: 1609; 71.3% identity (82.9% similar) in 369 aa overlap (1-360:33-370)
10 20 30
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIG
:.. : ::::::::::::::::::::::::
CCDS42 EGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB3 KKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNS
::::.:::::::::::::::::::::::.:..:::.::::::::: :.:::: .::.::
CCDS42 KKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB3 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG
:.:.:::::::::::::::::::::: :::::::::::::::::::::::::::.::.:
CCDS42 PATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB3 IPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTP
:..::.::::::::::::::::.::::::::.:.::::::::
CCDS42 TPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQ-----------------
190 200 210 220
220 230 240 250 260
pF1KB3 SMCLNPDLEGPPLEAYTIQGQYAIPQPD-LTKLHQLAMQQSHFP-MTHGNTGFSGIE---
:::::::::::.:: :::::::::::. :: . . : .: : .
CCDS42 --------------AYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPL
230 240 250 260 270
270 280 290 300 310 320
pF1KB3 SSSPEVKGYWG----LDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN
:: :... : :::: ...::::::::::::::::::.:::::::::::::::::
CCDS42 HSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN
280 290 300 310 320 330
330 340 350 360
pF1KB3 PVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
.:::..::.::::. :.:::::::::.::.::. :::.
CCDS42 ATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGTL
340 350 360 370
>>CCDS46652.1 PCBP3 gene_id:54039|Hs108|chr21 (345 aa)
initn: 1428 init1: 921 opt: 932 Z-score: 938.0 bits: 182.1 E(32554): 6.3e-46
Smith-Waterman score: 1407; 65.5% identity (76.4% similar) in 368 aa overlap (1-360:33-344)
10 20 30
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIG
:.. : ::::::::::::::::::::::::
CCDS46 EGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB3 KKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNS
::::.:::::::::::::::::::::::.:..:::.::::::::: :.:::: .::.::
CCDS46 KKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB3 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG
:.:.:::::::::::::::::::::: :::::::::::::::::::::::::::.::.:
CCDS46 PATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB3 IPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTP
:..::.:::::::::::
CCDS46 TPDAIIQCVKQICVVMLE------------------------------------------
190 200
220 230 240 250 260
pF1KB3 SMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFP-MTHGNTGFSGIE---S
:::::::::::.:::::::::::::. :: . . : .: : .
CCDS46 --------------AYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLH
210 220 230 240
270 280 290 300 310 320
pF1KB3 SSPEVKGYWG----LDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP
:: :... : :::: ...::::::::::::::::::.:::::::::::::::::
CCDS46 SSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANA
250 260 270 280 290 300
330 340 350 360
pF1KB3 VEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
.:::..::.::::. :.:::::::::.::.::. :::.
CCDS46 TEGSSERQITITGTPANISLAQYLINARLTSEVTGMGTL
310 320 330 340
361 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:11:01 2016 done: Fri Nov 4 02:11:01 2016
Total Scan time: 2.850 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]