FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3122, 218 aa
  1>>>pF1KB3122 218 - 218 aa - 218 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1890+/-0.000611; mu= 11.1068+/- 0.037
 mean_var=93.1384+/-18.632, 0's: 0 Z-trim(114.4): 19  B-trim: 0 in 0/52
 Lambda= 0.132895
 statistics sampled from 14955 (14974) to 14955 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.46), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS14239.1 PRRG1 gene_id:5638|Hs108|chrX          ( 218) 1493 295.2 2.1e-80
CCDS55397.1 PRRG1 gene_id:5638|Hs108|chrX          (  82)  381 81.8 1.4e-16
CCDS14699.1 PRRG3 gene_id:79057|Hs108|chrX         ( 231)  362 78.4 4.1e-15


>>CCDS14239.1 PRRG1 gene_id:5638|Hs108|chrX               (218 aa)
 initn: 1493 init1: 1493 opt: 1493  Z-score: 1557.0  bits: 295.2 E(32554): 2.1e-80
Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KB3 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WSTYTKAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WSTYTKAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 PFPQHLNIITPPPPPDEVFDSSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTYEEATGQVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PFPQHLNIITPPPPPDEVFDSSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTYEEATGQVN
              130       140       150       160       170       180

              190       200       210        
pF1KB3 LQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVVTTIK
       ::::::::::::::::::::::::::::::::::::::
CCDS14 LQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVVTTIK
              190       200       210        

>>CCDS55397.1 PRRG1 gene_id:5638|Hs108|chrX               (82 aa)
 initn: 381 init1: 381 opt: 381  Z-score: 411.1  bits: 81.8 E(32554): 1.4e-16
Smith-Waterman score: 381; 100.0% identity (100.0% similar) in 57 aa overlap (1-57:1-57)

               10        20        30        40        50        60
pF1KB3 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS55 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTGLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WSTYTKAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHI
                                                                   
CCDS55 LLPRLECSCEHGSLQPQLPVPK                                      
               70        80                                        

>>CCDS14699.1 PRRG3 gene_id:79057|Hs108|chrX              (231 aa)
 initn: 509 init1: 360 opt: 362  Z-score: 384.7  bits: 78.4 E(32554): 4.1e-15
Smith-Waterman score: 443; 38.1% identity (65.9% similar) in 226 aa overlap (4-203:3-226)

               10        20        30        40        50        60
pF1KB3 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
          ::: .. :.:.:::.:::: :.::.:::.::::: ::.:..::..:.:::.::: ::
CCDS14  MAVFLEAKDAHSVLKRFPRANEFLEELRQGTIERECMEEICSYEEVKEVFENKEKTMEF
                10        20        30        40        50         

               70          80        90       100       110        
pF1KB3 WSTYTKAQQG--ESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTR-------
       :. : .:  .  . ...::   .:.. ::.   ..:....:.:::: :.. ::       
CCDS14 WKGYPNAVYSVRDPSQSSD--AMYVVVPLLGVALLIVIALFIIWRCQLQKATRHHPSYAQ
      60        70          80        90       100       110       

                120           130       140         150       160  
pF1KB3 -RQTVTE-GH-IP----FPQHLNIITPPPPPDEVFDSSG--LSPGFLGYVVGRSDSVS--
        :  ... :: .:    .   ..    :    :. .:    :.:.  : .. : .:.   
CCDS14 NRYLASRAGHTLPRVMVYRGTVHSQGEPSGHREAANSPQVVLGPSRGGRTTVRLESTLYL
       120       130       140       150       160       170       

                   170        180       190       200       210    
pF1KB3 -----TRLSNCDPPPTYEEATG-QVNLQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVV
            .:::.  :::.:::.:. : . ..  .  . ::::.::.:: .:           
CCDS14 PELSLSRLSSTTPPPSYEEVTAPQESSSEEASVSYSDPPPKYEEIVAANPGADK      
       180       190       200       210       220       230       

           
pF1KB3 TTIK




218 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:51:43 2016 done: Sat Nov  5 04:51:43 2016
 Total Scan time:  2.050 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]