FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3129, 239 aa
  1>>>pF1KB3129 239 - 239 aa - 239 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4042+/-0.000876; mu= 2.9478+/- 0.053
 mean_var=208.6209+/-41.594, 0's: 0 Z-trim(114.8): 17  B-trim: 0 in 0/52
 Lambda= 0.088796
 statistics sampled from 15302 (15319) to 15302 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.471), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(32554)
CCDS11981.1 BCL2 gene_id:596|Hs108|chr18           ( 239) 1659 224.0   7e-59
CCDS45882.1 BCL2 gene_id:596|Hs108|chr18           ( 205) 1366 186.4 1.2e-47
CCDS13189.1 BCL2L1 gene_id:598|Hs108|chr20         ( 233)  599 88.2 5.2e-18
CCDS9591.1 BCL2L2 gene_id:599|Hs108|chr14          ( 193)  515 77.3 7.8e-15
CCDS55906.1 PABPN1 gene_id:100529063|Hs108|chr14   ( 333)  437 67.6 1.2e-11


>>CCDS11981.1 BCL2 gene_id:596|Hs108|chr18                (239 aa)
 initn: 1659 init1: 1659 opt: 1659  Z-score: 1170.6  bits: 224.0 E(32554): 7e-59
Smith-Waterman score: 1659; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)

               10        20        30        40        50        60
pF1KB3 MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 ASRDPVARTSPLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ASRDPVARTSPLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEY
              130       140       150       160       170       180

              190       200       210       220       230         
pF1KB3 LNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFSWLSLKTLLSLALVGACITLGAYLGHK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFSWLSLKTLLSLALVGACITLGAYLGHK
              190       200       210       220       230         

>>CCDS45882.1 BCL2 gene_id:596|Hs108|chr18                (205 aa)
 initn: 1366 init1: 1366 opt: 1366  Z-score: 968.6  bits: 186.4 E(32554): 1.2e-47
Smith-Waterman score: 1366; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KB3 MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 ASRDPVARTSPLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ASRDPVARTSPLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEY
              130       140       150       160       170       180

              190       200       210       220       230         
pF1KB3 LNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFSWLSLKTLLSLALVGACITLGAYLGHK
       :::::::::::::::                                            
CCDS45 LNRHLHTWIQDNGGWVGALGDVSLG                                  
              190       200                                       

>>CCDS13189.1 BCL2L1 gene_id:598|Hs108|chr20              (233 aa)
 initn: 606 init1: 524 opt: 599  Z-score: 436.8  bits: 88.2 E(32554): 5.2e-18
Smith-Waterman score: 599; 51.0% identity (72.0% similar) in 200 aa overlap (11-203:5-196)

               10        20        30         40         50        
pF1KB3 MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDA-GDVGAAPPGAAPAP-GIFSSQPGHTPH
                 :::.:. .. :::::.:: :.  .::     . . :: :  : .  .:: 
CCDS13       MSQSNRELVVDFLSYKLSQKGYSWSQFSDV---EENRTEAPEGTESEM--ETPS
                     10        20        30           40           

       60        70        80            90        100       110   
pF1KB3 PAASRDPVARTSPLQTPAAPGAAAGP----ALSPVP-PVVHLTLRQAGDDFSRRYRRDFA
        : . .:  . .  ..::. ::..      :   .:  .:. .::.:::.:  :::: :.
CCDS13 -AINGNPSWHLA--DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFS
       50        60          70        80        90       100      

           120       130       140       150       160       170   
pF1KB3 EMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNI
       ...::::.:: ::   :  ::.:::::::::::::::: :::..:::::..::. ::. :
CCDS13 DLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRI
        110       120       130       140       150       160      

           180       190       200       210       220       230   
pF1KB3 ALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFSWLSLKTLLSLALVGACITLG
       : ::. ::: ::. :::.:::::.::::::                              
CCDS13 AAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLL
        170       180       190       200       210       220      

>>CCDS9591.1 BCL2L2 gene_id:599|Hs108|chr14               (193 aa)
 initn: 490 init1: 460 opt: 515  Z-score: 379.8  bits: 77.3 E(32554): 7.8e-15
Smith-Waterman score: 515; 45.4% identity (74.8% similar) in 163 aa overlap (82-239:31-193)

              60        70        80        90       100       110 
pF1KB3 QPGHTPHPAASRDPVARTSPLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRD
                                     :::. .:.   .: ..: :::.:  :.:: 
CCDS95 MATPASAPDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRT
               10        20        30        40        50        60

             120       130       140       150       160       170 
pF1KB3 FAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVD
       :.....:::.:: .:. ::. : .:::. : ::::.:::: ::...:.::::.:: ::: 
CCDS95 FSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVG
               70        80        90       100       110       120

             180       190       200           210       220       
pF1KB3 NIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSM----RPLFDFSWLSLKTLLSLAL-V
       ..  ::. ::. .:  ::...:::  :. ::: .     : : . .: :..:.:. :. .
CCDS95 QVQEWMVAYLETQLADWIHSSGGWAEFTALYGDGALEEARRLREGNWASVRTVLTGAVAL
              130       140       150       160       170       180

        230         
pF1KB3 GACITLGAYLGHK
       :: .:.::... :
CCDS95 GALVTVGAFFASK
              190   

>>CCDS55906.1 PABPN1 gene_id:100529063|Hs108|chr14        (333 aa)
 initn: 514 init1: 437 opt: 437  Z-score: 322.6  bits: 67.6 E(32554): 1.2e-11
Smith-Waterman score: 437; 49.6% identity (79.1% similar) in 115 aa overlap (82-196:31-145)

              60        70        80        90       100       110 
pF1KB3 QPGHTPHPAASRDPVARTSPLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRD
                                     :::. .:.   .: ..: :::.:  :.:: 
CCDS55 MATPASAPDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRT
               10        20        30        40        50        60

             120       130       140       150       160       170 
pF1KB3 FAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVD
       :.....:::.:: .:. ::. : .:::. : ::::.:::: ::...:.::::.:: ::: 
CCDS55 FSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVG
               70        80        90       100       110       120

             180       190       200       210       220       230 
pF1KB3 NIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFSWLSLKTLLSLALVGACIT
       ..  ::. ::. .:  ::...:::.                                   
CCDS55 QVQEWMVAYLETQLADWIHSSGGWELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPP
              130       140       150       160       170       180




239 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:29:35 2016 done: Thu Nov  3 12:29:36 2016
 Total Scan time:  2.600 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]