FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3168, 790 aa
  1>>>pF1KB3168 790 - 790 aa - 790 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2439+/-0.000843; mu= 18.6006+/- 0.051
 mean_var=134.0954+/-26.451, 0's: 0 Z-trim(111.4): 26  B-trim: 5 in 1/53
 Lambda= 0.110756
 statistics sampled from 12377 (12389) to 12377 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.381), width:  16
 Scan time:  3.840

The best scores are:                                      opt bits E(32554)
CCDS5187.1 TNFAIP3 gene_id:7128|Hs108|chr6         ( 790) 5584 904.1       0
CCDS10026.1 OTUD7A gene_id:161725|Hs108|chr15      ( 926)  555 100.6 1.2e-20


>>CCDS5187.1 TNFAIP3 gene_id:7128|Hs108|chr6              (790 aa)
 initn: 5584 init1: 5584 opt: 5584  Z-score: 4827.6  bits: 904.1 E(32554):    0
Smith-Waterman score: 5584; 100.0% identity (100.0% similar) in 790 aa overlap (1-790:1-790)

               10        20        30        40        50        60
pF1KB3 MAEQVLPQALYLSNMRKAVKIRERTPEDIFKPTNGIIHHFKTMHRYTLEMFRTCQFCPQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MAEQVLPQALYLSNMRKAVKIRERTPEDIFKPTNGIIHHFKTMHRYTLEMFRTCQFCPQF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 REIIHKALIDRNIQATLESQKKLNWCREVRKLVALKTNGDGNCLMHATSQYMWGVQDTDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 REIIHKALIDRNIQATLESQKKLNWCREVRKLVALKTNGDGNCLMHATSQYMWGVQDTDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKMASTDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 VLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKMASTDTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 MARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 QECYRYPIVLGYDSHHFVPLVTLKDSGPEIRAVPLVNRDRGRFEDLKVHFLTDPENEMKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 QECYRYPIVLGYDSHHFVPLVTLKDSGPEIRAVPLVNRDRGRFEDLKVHFLTDPENEMKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 KLLKEYLMVIEIPVQGWDHGTTHLINAAKLDEANLPKEINLVDDYFELVQHEYKKWQENS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 KLLKEYLMVIEIPVQGWDHGTTHLINAAKLDEANLPKEINLVDDYFELVQHEYKKWQENS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EQGRREGHAQNPMEPSVPQLSLMDVKCETPNCPFFMSVNTQPLCHECSERRQKNQNKLPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 EQGRREGHAQNPMEPSVPQLSLMDVKCETPNCPFFMSVNTQPLCHECSERRQKNQNKLPK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 LNSKPGPEGLPGMALGASRGEAYEPLAWNPEESTGGPHSAPPTAPSPFLFSETTAMKCRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 LNSKPGPEGLPGMALGASRGEAYEPLAWNPEESTGGPHSAPPTAPSPFLFSETTAMKCRS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 PGCPFTLNVQHNGFCERCHNARQLHASHAPDHTRHLDPGKCQACLQDVTRTFNGICSTCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 PGCPFTLNVQHNGFCERCHNARQLHASHAPDHTRHLDPGKCQACLQDVTRTFNGICSTCF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 KRTTAEASSSLSTSLPPSCHQRSKSDPSRLVRSPSPHSCHRAGNDAPAGCLSQAARTPGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 KRTTAEASSSLSTSLPPSCHQRSKSDPSRLVRSPSPHSCHRAGNDAPAGCLSQAARTPGD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 RTGTSKCRKAGCVYFGTPENKGFCTLCFIEYRENKHFAAASGKVSPTASRFQNTIPCLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 RTGTSKCRKAGCVYFGTPENKGFCTLCFIEYRENKHFAAASGKVSPTASRFQNTIPCLGR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 ECGTLGSTMFEGYCQKCFIEAQNQRFHEAKRTEEQLRSSQRRDVPRTTQSTSRPKCARAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 ECGTLGSTMFEGYCQKCFIEAQNQRFHEAKRTEEQLRSSQRRDVPRTTQSTSRPKCARAS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 CKNILACRSEELCMECQHPNQRMGPGAHRGEPAPEDPPKQRCRAPACDHFGNAKCNGYCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 CKNILACRSEELCMECQHPNQRMGPGAHRGEPAPEDPPKQRCRAPACDHFGNAKCNGYCN
              730       740       750       760       770       780

              790
pF1KB3 ECFQFKQMYG
       ::::::::::
CCDS51 ECFQFKQMYG
              790

>>CCDS10026.1 OTUD7A gene_id:161725|Hs108|chr15           (926 aa)
 initn: 531 init1: 162 opt: 555  Z-score: 483.9  bits: 100.6 E(32554): 1.2e-20
Smith-Waterman score: 593; 38.2% identity (65.8% similar) in 272 aa overlap (43-294:146-404)

             20        30        40        50        60        70  
pF1KB3 SNMRKAVKIRERTPEDIFKPTNGIIHHFKTMHRYTLEMFRTCQFCPQFREIIHKALIDRN
                                     :  ::...     .  .:: .:.. ::.. 
CCDS10 RGISHASSAIVSLARSHVASECNNEQFPLEMPIYTFQLPDLSVYSEDFRSFIERDLIEQA
         120       130       140       150       160       170     

             80            90       100       110       120        
pF1KB3 IQATLESQKKLNW----CREVRKLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFS
        ...::.  .:::    :   ..:. : :.::::::.::.:  ::: .: ::::::::..
CCDS10 TMVALEQAGRLNWWSTVCTSCKRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYT
         180       190       200       210       220       230     

      130        140       150       160       170         180     
pF1KB3 TLKETDTRN-FKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKMASTD--TPMARSG
        ..    :. .: ::. .  ..:.  :       ..:. :: .:.:.::..  : ....:
CCDS10 MMRTGAEREALKRRWRWQ--QTQQNKE-------EEWEREWTELLKLASSEPRTHFSKNG
         240       250         260              270       280      

                    190       200       210       220       230    
pF1KB3 LQ-----------YNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYL
                    :.::::.:.::: .::::::.:..: :::.  .:  :::.  :::::
CCDS10 GTGGGVDNSEDPVYESLEEFHVFVLAHILRRPIVVVADTMLRD-SGGEAFAPIPFGGIYL
        290       300       310       320        330       340     

          240       250       260         270       280       290  
pF1KB3 PLHWPAQECYRYPIVLGYDSHHFVPLVTL--KDSGPEIRAVPLVNRDRGRFEDLKVHFLT
       ::. : ..:.  :.::.::. ::  ::..  .:.  :  ..::.. ..   . : .:: .
CCDS10 PLEVPPNRCHCSPLVLAYDQAHFSALVSMEQRDQQREQAVIPLTDSEH---KLLPLHFAV
         350       360       370       380       390          400  

            300       310       320       330       340       350  
pF1KB3 DPENEMKEKLLKEYLMVIEIPVQGWDHGTTHLINAAKLDEANLPKEINLVDDYFELVQHE
       ::                                                          
CCDS10 DPGKDWEWGKDDNDNARLAHLILSLEAKLNLLHSYMNVTWIRIPSETRAPLAQPESPTAS
            410       420       430       440       450       460  




790 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:36:07 2016 done: Sat Nov  5 19:36:08 2016
 Total Scan time:  3.840 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]