Result of FASTA (omim) for
pF1KB3226
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3226, 620 aa
1>>>pF1KB3226 620 - 620 aa - 620 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.0240+/-0.000437; mu= -20.2022+/- 0.027
mean_var=553.2214+/-115.197, 0's: 0 Z-trim(124.5): 37 B-trim: 1529 in 1/58
Lambda= 0.054529
statistics sampled from 46186 (46223) to 46186 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.542), width: 16
Scan time: 11.880
The best scores are: opt bits E(85289)
XP_011536311 (OMIM: 602582) PREDICTED: E3 ubiquiti ( 620) 4378 359.2 2.5e-98
NP_004407 (OMIM: 602582) E3 ubiquitin-protein liga ( 620) 4378 359.2 2.5e-98
NP_001287656 (OMIM: 616110) E3 ubiquitin-protein l ( 513) 1871 161.9 5e-39
XP_006718546 (OMIM: 616110) PREDICTED: E3 ubiquiti ( 513) 1871 161.9 5e-39
NP_055992 (OMIM: 616110) E3 ubiquitin-protein liga ( 619) 1871 162.0 5.8e-39
XP_005250189 (OMIM: 613141) PREDICTED: probable E3 ( 622) 1808 157.0 1.8e-37
NP_001096064 (OMIM: 613141) probable E3 ubiquitin- ( 622) 1808 157.0 1.8e-37
XP_011514077 (OMIM: 613141) PREDICTED: probable E3 ( 622) 1808 157.0 1.8e-37
NP_065943 (OMIM: 613141) probable E3 ubiquitin-pro ( 622) 1808 157.0 1.8e-37
XP_011514076 (OMIM: 613141) PREDICTED: probable E3 ( 622) 1808 157.0 1.8e-37
NP_001096065 (OMIM: 613141) probable E3 ubiquitin- ( 622) 1808 157.0 1.8e-37
XP_016867213 (OMIM: 613141) PREDICTED: probable E3 ( 622) 1808 157.0 1.8e-37
XP_011514075 (OMIM: 613141) PREDICTED: probable E3 ( 622) 1808 157.0 1.8e-37
XP_016867214 (OMIM: 613141) PREDICTED: probable E3 ( 622) 1808 157.0 1.8e-37
XP_005250188 (OMIM: 613141) PREDICTED: probable E3 ( 622) 1808 157.0 1.8e-37
XP_011514074 (OMIM: 613141) PREDICTED: probable E3 ( 622) 1808 157.0 1.8e-37
XP_016867212 (OMIM: 613141) PREDICTED: probable E3 ( 622) 1808 157.0 1.8e-37
XP_016867216 (OMIM: 613141) PREDICTED: probable E3 ( 575) 1197 108.9 5e-23
NP_001096066 (OMIM: 613141) probable E3 ubiquitin- ( 575) 1197 108.9 5e-23
XP_016867215 (OMIM: 613141) PREDICTED: probable E3 ( 575) 1197 108.9 5e-23
XP_016867219 (OMIM: 613141) PREDICTED: probable E3 ( 414) 687 68.7 4.7e-11
XP_016867218 (OMIM: 613141) PREDICTED: probable E3 ( 419) 687 68.7 4.7e-11
XP_016867217 (OMIM: 613141) PREDICTED: probable E3 ( 568) 567 59.3 4.1e-08
NP_612144 (OMIM: 613143) E3 ubiquitin-protein liga ( 740) 498 54.0 2.2e-06
XP_011536324 (OMIM: 613142) PREDICTED: probable E3 ( 347) 409 46.7 0.00016
NP_848597 (OMIM: 613142) probable E3 ubiquitin-pro ( 347) 409 46.7 0.00016
NP_001273175 (OMIM: 613142) probable E3 ubiquitin- ( 347) 409 46.7 0.00016
XP_005268760 (OMIM: 613142) PREDICTED: probable E3 ( 347) 409 46.7 0.00016
NP_001273174 (OMIM: 613142) probable E3 ubiquitin- ( 350) 409 46.7 0.00016
XP_005268757 (OMIM: 613142) PREDICTED: probable E3 ( 350) 409 46.7 0.00016
XP_005268754 (OMIM: 613142) PREDICTED: probable E3 ( 350) 409 46.7 0.00016
XP_005268755 (OMIM: 613142) PREDICTED: probable E3 ( 350) 409 46.7 0.00016
>>XP_011536311 (OMIM: 602582) PREDICTED: E3 ubiquitin-pr (620 aa)
initn: 4378 init1: 4378 opt: 4378 Z-score: 1886.4 bits: 359.2 E(85289): 2.5e-98
Smith-Waterman score: 4378; 100.0% identity (100.0% similar) in 620 aa overlap (1-620:1-620)
10 20 30 40 50 60
pF1KB3 MSRPGHGGLMPVNGLGFPPQNVARVVVWEWLNEHSRWRPYTATVCHHIENVLKEDARGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSRPGHGGLMPVNGLGFPPQNVARVVVWEWLNEHSRWRPYTATVCHHIENVLKEDARGSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 VLGQVDAQLVPYIIDLQSMHQFRQDTGTMRPVRRNFYDPSSAPGKGIVWEWENDGGAWTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLGQVDAQLVPYIIDLQSMHQFRQDTGTMRPVRRNFYDPSSAPGKGIVWEWENDGGAWTA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YDMDICITIQNAYEKQHPWLDLSSLGFCYLIYFNSMSQMNRQTRRRRRLRRRLDLAYPLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YDMDICITIQNAYEKQHPWLDLSSLGFCYLIYFNSMSQMNRQTRRRRRLRRRLDLAYPLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 VGSIPKSQSWPVGASSGQPCSCQQCLLVNSTRAASNAILASQRRKAPPAPPLPPPPPPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGSIPKSQSWPVGASSGQPCSCQQCLLVNSTRAASNAILASQRRKAPPAPPLPPPPPPGG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 PPGALAVRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGAPGGARTPGQNNLNRPGPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPGALAVRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGAPGGARTPGQNNLNRPGPQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 RTTSVSARASIPPGVPALPVKNLNGTGPVHPALAGMTGILLCAAGLPVCLTRAPKPILHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTTSVSARASIPPGVPALPVKNLNGTGPVHPALAGMTGILLCAAGLPVCLTRAPKPILHP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 PPVSKSDVKPVPGVPGVCRKTKKKHLKKSKNPEDVVRRYMQKVKNPPDEDCTICMERLVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPVSKSDVKPVPGVPGVCRKTKKKHLKKSKNPEDVVRRYMQKVKNPPDEDCTICMERLVT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 ASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPTCKAIYGEKTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPTCKAIYGEKTG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 TQPPGKMEFHLIPHSLPGFPDTQTIRIVYDIPTGIQGPEHPNPGKKFTARGFPRHCYLPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQPPGKMEFHLIPHSLPGFPDTQTIRIVYDIPTGIQGPEHPNPGKKFTARGFPRHCYLPN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 NEKGRKVLRLLITAWERRLIFTIGTSNTTGESDTVVWNEIHHKTEFGSNLTGHGYPDASY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NEKGRKVLRLLITAWERRLIFTIGTSNTTGESDTVVWNEIHHKTEFGSNLTGHGYPDASY
550 560 570 580 590 600
610 620
pF1KB3 LDNVLAELTAQGVSEAAAKA
::::::::::::::::::::
XP_011 LDNVLAELTAQGVSEAAAKA
610 620
>>NP_004407 (OMIM: 602582) E3 ubiquitin-protein ligase D (620 aa)
initn: 4378 init1: 4378 opt: 4378 Z-score: 1886.4 bits: 359.2 E(85289): 2.5e-98
Smith-Waterman score: 4378; 100.0% identity (100.0% similar) in 620 aa overlap (1-620:1-620)
10 20 30 40 50 60
pF1KB3 MSRPGHGGLMPVNGLGFPPQNVARVVVWEWLNEHSRWRPYTATVCHHIENVLKEDARGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSRPGHGGLMPVNGLGFPPQNVARVVVWEWLNEHSRWRPYTATVCHHIENVLKEDARGSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 VLGQVDAQLVPYIIDLQSMHQFRQDTGTMRPVRRNFYDPSSAPGKGIVWEWENDGGAWTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VLGQVDAQLVPYIIDLQSMHQFRQDTGTMRPVRRNFYDPSSAPGKGIVWEWENDGGAWTA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YDMDICITIQNAYEKQHPWLDLSSLGFCYLIYFNSMSQMNRQTRRRRRLRRRLDLAYPLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YDMDICITIQNAYEKQHPWLDLSSLGFCYLIYFNSMSQMNRQTRRRRRLRRRLDLAYPLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 VGSIPKSQSWPVGASSGQPCSCQQCLLVNSTRAASNAILASQRRKAPPAPPLPPPPPPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VGSIPKSQSWPVGASSGQPCSCQQCLLVNSTRAASNAILASQRRKAPPAPPLPPPPPPGG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 PPGALAVRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGAPGGARTPGQNNLNRPGPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PPGALAVRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGAPGGARTPGQNNLNRPGPQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 RTTSVSARASIPPGVPALPVKNLNGTGPVHPALAGMTGILLCAAGLPVCLTRAPKPILHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RTTSVSARASIPPGVPALPVKNLNGTGPVHPALAGMTGILLCAAGLPVCLTRAPKPILHP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 PPVSKSDVKPVPGVPGVCRKTKKKHLKKSKNPEDVVRRYMQKVKNPPDEDCTICMERLVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PPVSKSDVKPVPGVPGVCRKTKKKHLKKSKNPEDVVRRYMQKVKNPPDEDCTICMERLVT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 ASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPTCKAIYGEKTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPTCKAIYGEKTG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 TQPPGKMEFHLIPHSLPGFPDTQTIRIVYDIPTGIQGPEHPNPGKKFTARGFPRHCYLPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TQPPGKMEFHLIPHSLPGFPDTQTIRIVYDIPTGIQGPEHPNPGKKFTARGFPRHCYLPN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 NEKGRKVLRLLITAWERRLIFTIGTSNTTGESDTVVWNEIHHKTEFGSNLTGHGYPDASY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NEKGRKVLRLLITAWERRLIFTIGTSNTTGESDTVVWNEIHHKTEFGSNLTGHGYPDASY
550 560 570 580 590 600
610 620
pF1KB3 LDNVLAELTAQGVSEAAAKA
::::::::::::::::::::
NP_004 LDNVLAELTAQGVSEAAAKA
610 620
>>NP_001287656 (OMIM: 616110) E3 ubiquitin-protein ligas (513 aa)
initn: 2163 init1: 1130 opt: 1871 Z-score: 821.6 bits: 161.9 E(85289): 5e-39
Smith-Waterman score: 2186; 62.4% identity (83.1% similar) in 510 aa overlap (123-615:1-505)
100 110 120 130 140 150
pF1KB3 RRNFYDPSSAPGKGIVWEWENDGGAWTAYDMDICITIQNAYEKQHPWLDLSSLGFCYLIY
:.. ::::.::::::::.::.:.:: :.:
NP_001 MEVGITIQHAYEKQHPWIDLTSIGFSYVID
10 20 30
160 170 180 190 200
pF1KB3 FNSMSQMNRQTRRRRRLRRRLDLAYPLTVGSIPKSQSWPV--GASSG---QPCSCQQCLL
::.:.:.::::.:.::.:::::: ::...:..::.::::: : ... .:::: ::.:
NP_001 FNTMGQINRQTQRQRRVRRRLDLIYPMVTGTLPKAQSWPVSPGPATSPPMSPCSCPQCVL
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB3 VNSTRAA-----SNAI-LASQRRKAPPAPPLPPPPPPGGPPGALAVRPSATFTGAALWAA
: :..:: .. . : :.. :: . :: ::. :: . ..:. : : .:
NP_001 VMSVKAAVVNGSTGPLQLPVTRKNMPPPGVVKLPPLPGS--GAKPLDSTGTIRGP-LKTA
100 110 120 130 140
270 280 290 300 310
pF1KB3 PAAGPAEPAP--PPGAPPRSPGAPGGARTP-GQ---NNLNRPGPQRTTSVSARASIPPGV
:. . : : :. ::..: : . :. .::: . :: . ...:. : ::
NP_001 PSQVIRRQASSMPTGTTMGSPASPPGPNSKTGRVALATLNRTNLQRLAIAQSRVLIASGV
150 160 170 180 190 200
320 330 340 350 360 370
pF1KB3 PALPVKNLNGTGPVHPALAGMTGILLCAAGLPVCLTRAPKPILHPPPVSKSDVKPVPGVP
:..:::::::..::.:::::.::::. :::::::::: :: .:::::::::..: .:::
NP_001 PTVPVKNLNGSSPVNPALAGITGILMSAAGLPVCLTRPPKLVLHPPPVSKSEIKSIPGVS
210 220 230 240 250 260
380 390 400 410 420 430
pF1KB3 GVCRKTKKKHLKKSKNPEDVVRRYMQKVKNPPDEDCTICMERLVTASGYEGVLRHKGVRP
.. ::: ::. ::.:.::.:...:.:::..:::::::::::::.. :::.: . :.:
NP_001 NTSRKTTKKQAKKGKTPEEVLKKYLQKVRHPPDEDCTICMERLTAPSGYKGP--QPTVKP
270 280 290 300 310 320
440 450 460 470 480 490
pF1KB3 ELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPTCKAIYGEKTGTQPPGKMEFHLIPHS
.:::.:.::::.::. ::::::.::::::::::::::.::: :::::::::::.::::::
NP_001 DLVGKLSRCGHVYHIYCLVAMYNNGNKDGSLQCPTCKTIYGVKTGTQPPGKMEYHLIPHS
330 340 350 360 370 380
500 510 520 530 540 550
pF1KB3 LPGFPDTQTIRIVYDIPTGIQGPEHPNPGKKFTARGFPRHCYLPNNEKGRKVLRLLITAW
::: :: .::::.:.:: ::::::::::::.:.:::::::::::..:::::::.::..::
NP_001 LPGHPDCKTIRIIYSIPPGIQGPEHPNPGKSFSARGFPRHCYLPDSEKGRKVLKLLLVAW
390 400 410 420 430 440
560 570 580 590 600 610
pF1KB3 ERRLIFTIGTSNTTGESDTVVWNEIHHKTEFGSNLTGHGYPDASYLDNVLAELTAQGVSE
.:::::.::::.::::::::.:::.::::::::::::::::::.:::::::::.:::.::
NP_001 DRRLIFAIGTSSTTGESDTVIWNEVHHKTEFGSNLTGHGYPDANYLDNVLAELAAQGISE
450 460 470 480 490 500
620
pF1KB3 AAAKA
NP_001 DSTAQEKD
510
>>XP_006718546 (OMIM: 616110) PREDICTED: E3 ubiquitin-pr (513 aa)
initn: 2163 init1: 1130 opt: 1871 Z-score: 821.6 bits: 161.9 E(85289): 5e-39
Smith-Waterman score: 2186; 62.4% identity (83.1% similar) in 510 aa overlap (123-615:1-505)
100 110 120 130 140 150
pF1KB3 RRNFYDPSSAPGKGIVWEWENDGGAWTAYDMDICITIQNAYEKQHPWLDLSSLGFCYLIY
:.. ::::.::::::::.::.:.:: :.:
XP_006 MEVGITIQHAYEKQHPWIDLTSIGFSYVID
10 20 30
160 170 180 190 200
pF1KB3 FNSMSQMNRQTRRRRRLRRRLDLAYPLTVGSIPKSQSWPV--GASSG---QPCSCQQCLL
::.:.:.::::.:.::.:::::: ::...:..::.::::: : ... .:::: ::.:
XP_006 FNTMGQINRQTQRQRRVRRRLDLIYPMVTGTLPKAQSWPVSPGPATSPPMSPCSCPQCVL
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB3 VNSTRAA-----SNAI-LASQRRKAPPAPPLPPPPPPGGPPGALAVRPSATFTGAALWAA
: :..:: .. . : :.. :: . :: ::. :: . ..:. : : .:
XP_006 VMSVKAAVVNGSTGPLQLPVTRKNMPPPGVVKLPPLPGS--GAKPLDSTGTIRGP-LKTA
100 110 120 130 140
270 280 290 300 310
pF1KB3 PAAGPAEPAP--PPGAPPRSPGAPGGARTP-GQ---NNLNRPGPQRTTSVSARASIPPGV
:. . : : :. ::..: : . :. .::: . :: . ...:. : ::
XP_006 PSQVIRRQASSMPTGTTMGSPASPPGPNSKTGRVALATLNRTNLQRLAIAQSRVLIASGV
150 160 170 180 190 200
320 330 340 350 360 370
pF1KB3 PALPVKNLNGTGPVHPALAGMTGILLCAAGLPVCLTRAPKPILHPPPVSKSDVKPVPGVP
:..:::::::..::.:::::.::::. :::::::::: :: .:::::::::..: .:::
XP_006 PTVPVKNLNGSSPVNPALAGITGILMSAAGLPVCLTRPPKLVLHPPPVSKSEIKSIPGVS
210 220 230 240 250 260
380 390 400 410 420 430
pF1KB3 GVCRKTKKKHLKKSKNPEDVVRRYMQKVKNPPDEDCTICMERLVTASGYEGVLRHKGVRP
.. ::: ::. ::.:.::.:...:.:::..:::::::::::::.. :::.: . :.:
XP_006 NTSRKTTKKQAKKGKTPEEVLKKYLQKVRHPPDEDCTICMERLTAPSGYKGP--QPTVKP
270 280 290 300 310 320
440 450 460 470 480 490
pF1KB3 ELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPTCKAIYGEKTGTQPPGKMEFHLIPHS
.:::.:.::::.::. ::::::.::::::::::::::.::: :::::::::::.::::::
XP_006 DLVGKLSRCGHVYHIYCLVAMYNNGNKDGSLQCPTCKTIYGVKTGTQPPGKMEYHLIPHS
330 340 350 360 370 380
500 510 520 530 540 550
pF1KB3 LPGFPDTQTIRIVYDIPTGIQGPEHPNPGKKFTARGFPRHCYLPNNEKGRKVLRLLITAW
::: :: .::::.:.:: ::::::::::::.:.:::::::::::..:::::::.::..::
XP_006 LPGHPDCKTIRIIYSIPPGIQGPEHPNPGKSFSARGFPRHCYLPDSEKGRKVLKLLLVAW
390 400 410 420 430 440
560 570 580 590 600 610
pF1KB3 ERRLIFTIGTSNTTGESDTVVWNEIHHKTEFGSNLTGHGYPDASYLDNVLAELTAQGVSE
.:::::.::::.::::::::.:::.::::::::::::::::::.:::::::::.:::.::
XP_006 DRRLIFAIGTSSTTGESDTVIWNEVHHKTEFGSNLTGHGYPDANYLDNVLAELAAQGISE
450 460 470 480 490 500
620
pF1KB3 AAAKA
XP_006 DSTAQEKD
510
>>NP_055992 (OMIM: 616110) E3 ubiquitin-protein ligase D (619 aa)
initn: 2559 init1: 1130 opt: 1871 Z-score: 820.5 bits: 162.0 E(85289): 5.8e-39
Smith-Waterman score: 2758; 64.9% identity (84.4% similar) in 610 aa overlap (25-615:7-611)
10 20 30 40 50
pF1KB3 MSRPGHGGLMPVNGLGFPPQNVARVVVWEWLNEHSRWRPYTATVCHHIENVLKEDAR--G
::::::::::.:::::. .: :::: :.. : :
NP_055 MLLASAVVVWEWLNEHGRWRPYSPAVSHHIEAVVRAGPRAGG
10 20 30 40
60 70 80 90 100 110
pF1KB3 SVVLGQVDAQLVPYIIDLQSMHQFRQDTGTMRPVRRNFYDPSSAPGKGIVWEWENDGGAW
::::::::..:.:::::::::.::::::::.::::::.::::::::::.:::::::.:.:
NP_055 SVVLGQVDSRLAPYIIDLQSMNQFRQDTGTLRPVRRNYYDPSSAPGKGVVWEWENDNGSW
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB3 TAYDMDICITIQNAYEKQHPWLDLSSLGFCYLIYFNSMSQMNRQTRRRRRLRRRLDLAYP
: :::.. ::::.::::::::.::.:.:: :.: ::.:.:.::::.:.::.:::::: ::
NP_055 TPYDMEVGITIQHAYEKQHPWIDLTSIGFSYVIDFNTMGQINRQTQRQRRVRRRLDLIYP
110 120 130 140 150 160
180 190 200 210 220
pF1KB3 LTVGSIPKSQSWPVG---ASSG--QPCSCQQCLLVNSTRAA-----SNAI-LASQRRKAP
...:..::.:::::. :.: .:::: ::.:: :..:: .. . : :.. :
NP_055 MVTGTLPKAQSWPVSPGPATSPPMSPCSCPQCVLVMSVKAAVVNGSTGPLQLPVTRKNMP
170 180 190 200 210 220
230 240 250 260 270 280
pF1KB3 PAPPLPPPPPPGGPPGALAVRPSATFTGAALWAAPAAGPAEPAP--PPGAPPRSPGAPGG
: . :: ::. :: . ..:. : : .::. . : : :. ::..: :
NP_055 PPGVVKLPPLPGS--GAKPLDSTGTIRGP-LKTAPSQVIRRQASSMPTGTTMGSPASPPG
230 240 250 260 270
290 300 310 320 330 340
pF1KB3 ARTP-GQ---NNLNRPGPQRTTSVSARASIPPGVPALPVKNLNGTGPVHPALAGMTGILL
. :. .::: . :: . ...:. : :::..:::::::..::.:::::.::::.
NP_055 PNSKTGRVALATLNRTNLQRLAIAQSRVLIASGVPTVPVKNLNGSSPVNPALAGITGILM
280 290 300 310 320 330
350 360 370 380 390 400
pF1KB3 CAAGLPVCLTRAPKPILHPPPVSKSDVKPVPGVPGVCRKTKKKHLKKSKNPEDVVRRYMQ
:::::::::: :: .:::::::::..: .::: .. ::: ::. ::.:.::.:...:.:
NP_055 SAAGLPVCLTRPPKLVLHPPPVSKSEIKSIPGVSNTSRKTTKKQAKKGKTPEEVLKKYLQ
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB3 KVKNPPDEDCTICMERLVTASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCLVAMYSNGN
::..:::::::::::::.. :::.: . :.:.:::.:.::::.::. ::::::.:::
NP_055 KVRHPPDEDCTICMERLTAPSGYKGP--QPTVKPDLVGKLSRCGHVYHIYCLVAMYNNGN
400 410 420 430 440 450
470 480 490 500 510 520
pF1KB3 KDGSLQCPTCKAIYGEKTGTQPPGKMEFHLIPHSLPGFPDTQTIRIVYDIPTGIQGPEHP
:::::::::::.::: :::::::::::.::::::::: :: .::::.:.:: ::::::::
NP_055 KDGSLQCPTCKTIYGVKTGTQPPGKMEYHLIPHSLPGHPDCKTIRIIYSIPPGIQGPEHP
460 470 480 490 500 510
530 540 550 560 570 580
pF1KB3 NPGKKFTARGFPRHCYLPNNEKGRKVLRLLITAWERRLIFTIGTSNTTGESDTVVWNEIH
::::.:.:::::::::::..:::::::.::..::.:::::.::::.::::::::.:::.:
NP_055 NPGKSFSARGFPRHCYLPDSEKGRKVLKLLLVAWDRRLIFAIGTSSTTGESDTVIWNEVH
520 530 540 550 560 570
590 600 610 620
pF1KB3 HKTEFGSNLTGHGYPDASYLDNVLAELTAQGVSEAAAKA
:::::::::::::::::.:::::::::.:::.::
NP_055 HKTEFGSNLTGHGYPDANYLDNVLAELAAQGISEDSTAQEKD
580 590 600 610
>>XP_005250189 (OMIM: 613141) PREDICTED: probable E3 ubi (622 aa)
initn: 1732 init1: 1108 opt: 1808 Z-score: 793.7 bits: 157.0 E(85289): 1.8e-37
Smith-Waterman score: 1810; 48.2% identity (67.6% similar) in 620 aa overlap (23-615:17-616)
10 20 30 40 50
pF1KB3 MSRPGHGGLMPVNGLGFPPQNVARVVVWEWLNEHSRWRPYTATVCHHIEN--VLKEDAR-
: :.:::: . . :.::.:::: ::. : .. :
XP_005 MAMAPSPSLVQVYTSPAAVAVWEWQDGLGTWHPYSATVCSFIEQQFVQQKGQRF
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 --GSVV----LGQVDAQLVPYIIDLQSMHQFRQDTGTMRPVRRNFYDPSSAPGKGIVWEW
::.. :::.: .:.:::::: : :::::::::: :::... ::::.:.::::
XP_005 GLGSLAHSIPLGQADPSLAPYIIDLPSWTQFRQDTGTMRAVRRHLFPQHSAPGRGVVWEW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 ENDGGAWTAYDMDICITIQNAYEKQHPWLDLSSLGFCYLIYFNSMSQMNRQTRRRRRLRR
.: :.::::. ..: ... . . .::. ::. : . ... .: :. . : .::
XP_005 LSDDGSWTAYEASVCDYLEQQVARGNQLVDLAPLGYNYTVNYTTHTQTNKTSSFCRSVRR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 RLDLAYPLTVGSIPKSQSWPVGASSGQPCSCQQCLLVNSTRAASNAILASQRRKAPPAPP
. ::.:. : ... : :::.::: . : .:. :. :: :
XP_005 QAGPPYPVTTIIAPPGHT-------GVACSCHQCLSGSRTGPVSGRYRHSMTNL--PAYP
180 190 200 210 220
240 250 260 270 280
pF1KB3 LPPPPPPG-----GPPGALAVRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGAPGGA
.: :: : :.: . ...:: .:: . .. :: : : :.
XP_005 VPQHPPHRTASVFGTHQAFAPYNKPSLSGAR--SAPRLNTTNAW---GAAPPSLGSQPLY
230 240 250 260 270 280
290 300 310 320 330
pF1KB3 RTPGQNNLNRPGPQR-----TTSVSARASIP------PG-VPALPVKNLNGTGPVHPALA
:. .:.. :::. .:: .. ::.: :: ::: .. . :. :::
XP_005 RS----SLSHLGPQHLPPGSSTSGAVSASLPSGPSSSPGSVPATVPMQMPKPSRVQQALA
290 300 310 320 330
340 350 360 370 380 390
pF1KB3 GMTGILLCAAGLPVCLTRAPKPILHPPPVSKSDVKPVPGVPGVCRKTKKKHLKKSK-NPE
:::..:. : ::::::.:::.: ::.:. : .: . . . : : . .::
XP_005 GMTSVLMSAIGLPVCLSRAPQPT--SPPASRLASKSHGSVKRLRKMSVKGATPKPEPEPE
340 350 360 370 380 390
400 410 420 430 440 450
pF1KB3 DVVRRYMQKVKNPPDEDCTICMERLVTASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCL
.:.. : ...: :::::: ::::.: ::::: : :.. ::.: .:.: .:::::
XP_005 QVIKNYTEELKVPPDEDCIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCL
400 410 420 430 440 450
460 470 480 490 500 510
pF1KB3 VAMYSNGNKDGSLQCPTCKAIYGEKTGTQPPGKMEFHLIPHSLPGFPDTQTIRIVYDIPT
.::: :::::::::::.::.:::::::::: :::: . :::: : :: :::.::
XP_005 LAMYCNGNKDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSIPH
460 470 480 490 500 510
520 530 540 550 560 570
pF1KB3 GIQGPEHPNPGKKFTARGFPRHCYLPNNEKGRKVLRLLITAWERRLIFTIGTSNTTGESD
:::::::::::: ::::::::.::::.: .:::::.:: .::.::::::.:::.::::.:
XP_005 GIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTGETD
520 530 540 550 560 570
580 590 600 610 620
pF1KB3 TVVWNEIHHKTEFGSNLTGHGYPDASYLDNVLAELTAQGVSEAAAKA
::::::::::::. :.::::::: .::.::::::.::::.:
XP_005 TVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ
580 590 600 610 620
>>NP_001096064 (OMIM: 613141) probable E3 ubiquitin-prot (622 aa)
initn: 1732 init1: 1108 opt: 1808 Z-score: 793.7 bits: 157.0 E(85289): 1.8e-37
Smith-Waterman score: 1810; 48.2% identity (67.6% similar) in 620 aa overlap (23-615:17-616)
10 20 30 40 50
pF1KB3 MSRPGHGGLMPVNGLGFPPQNVARVVVWEWLNEHSRWRPYTATVCHHIEN--VLKEDAR-
: :.:::: . . :.::.:::: ::. : .. :
NP_001 MAMAPSPSLVQVYTSPAAVAVWEWQDGLGTWHPYSATVCSFIEQQFVQQKGQRF
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 --GSVV----LGQVDAQLVPYIIDLQSMHQFRQDTGTMRPVRRNFYDPSSAPGKGIVWEW
::.. :::.: .:.:::::: : :::::::::: :::... ::::.:.::::
NP_001 GLGSLAHSIPLGQADPSLAPYIIDLPSWTQFRQDTGTMRAVRRHLFPQHSAPGRGVVWEW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 ENDGGAWTAYDMDICITIQNAYEKQHPWLDLSSLGFCYLIYFNSMSQMNRQTRRRRRLRR
.: :.::::. ..: ... . . .::. ::. : . ... .: :. . : .::
NP_001 LSDDGSWTAYEASVCDYLEQQVARGNQLVDLAPLGYNYTVNYTTHTQTNKTSSFCRSVRR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 RLDLAYPLTVGSIPKSQSWPVGASSGQPCSCQQCLLVNSTRAASNAILASQRRKAPPAPP
. ::.:. : ... : :::.::: . : .:. :. :: :
NP_001 QAGPPYPVTTIIAPPGHT-------GVACSCHQCLSGSRTGPVSGRYRHSMTNL--PAYP
180 190 200 210 220
240 250 260 270 280
pF1KB3 LPPPPPPG-----GPPGALAVRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGAPGGA
.: :: : :.: . ...:: .:: . .. :: : : :.
NP_001 VPQHPPHRTASVFGTHQAFAPYNKPSLSGAR--SAPRLNTTNAW---GAAPPSLGSQPLY
230 240 250 260 270 280
290 300 310 320 330
pF1KB3 RTPGQNNLNRPGPQR-----TTSVSARASIP------PG-VPALPVKNLNGTGPVHPALA
:. .:.. :::. .:: .. ::.: :: ::: .. . :. :::
NP_001 RS----SLSHLGPQHLPPGSSTSGAVSASLPSGPSSSPGSVPATVPMQMPKPSRVQQALA
290 300 310 320 330
340 350 360 370 380 390
pF1KB3 GMTGILLCAAGLPVCLTRAPKPILHPPPVSKSDVKPVPGVPGVCRKTKKKHLKKSK-NPE
:::..:. : ::::::.:::.: ::.:. : .: . . . : : . .::
NP_001 GMTSVLMSAIGLPVCLSRAPQPT--SPPASRLASKSHGSVKRLRKMSVKGATPKPEPEPE
340 350 360 370 380 390
400 410 420 430 440 450
pF1KB3 DVVRRYMQKVKNPPDEDCTICMERLVTASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCL
.:.. : ...: :::::: ::::.: ::::: : :.. ::.: .:.: .:::::
NP_001 QVIKNYTEELKVPPDEDCIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCL
400 410 420 430 440 450
460 470 480 490 500 510
pF1KB3 VAMYSNGNKDGSLQCPTCKAIYGEKTGTQPPGKMEFHLIPHSLPGFPDTQTIRIVYDIPT
.::: :::::::::::.::.:::::::::: :::: . :::: : :: :::.::
NP_001 LAMYCNGNKDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSIPH
460 470 480 490 500 510
520 530 540 550 560 570
pF1KB3 GIQGPEHPNPGKKFTARGFPRHCYLPNNEKGRKVLRLLITAWERRLIFTIGTSNTTGESD
:::::::::::: ::::::::.::::.: .:::::.:: .::.::::::.:::.::::.:
NP_001 GIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTGETD
520 530 540 550 560 570
580 590 600 610 620
pF1KB3 TVVWNEIHHKTEFGSNLTGHGYPDASYLDNVLAELTAQGVSEAAAKA
::::::::::::. :.::::::: .::.::::::.::::.:
NP_001 TVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ
580 590 600 610 620
>>XP_011514077 (OMIM: 613141) PREDICTED: probable E3 ubi (622 aa)
initn: 1732 init1: 1108 opt: 1808 Z-score: 793.7 bits: 157.0 E(85289): 1.8e-37
Smith-Waterman score: 1810; 48.2% identity (67.6% similar) in 620 aa overlap (23-615:17-616)
10 20 30 40 50
pF1KB3 MSRPGHGGLMPVNGLGFPPQNVARVVVWEWLNEHSRWRPYTATVCHHIEN--VLKEDAR-
: :.:::: . . :.::.:::: ::. : .. :
XP_011 MAMAPSPSLVQVYTSPAAVAVWEWQDGLGTWHPYSATVCSFIEQQFVQQKGQRF
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 --GSVV----LGQVDAQLVPYIIDLQSMHQFRQDTGTMRPVRRNFYDPSSAPGKGIVWEW
::.. :::.: .:.:::::: : :::::::::: :::... ::::.:.::::
XP_011 GLGSLAHSIPLGQADPSLAPYIIDLPSWTQFRQDTGTMRAVRRHLFPQHSAPGRGVVWEW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 ENDGGAWTAYDMDICITIQNAYEKQHPWLDLSSLGFCYLIYFNSMSQMNRQTRRRRRLRR
.: :.::::. ..: ... . . .::. ::. : . ... .: :. . : .::
XP_011 LSDDGSWTAYEASVCDYLEQQVARGNQLVDLAPLGYNYTVNYTTHTQTNKTSSFCRSVRR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 RLDLAYPLTVGSIPKSQSWPVGASSGQPCSCQQCLLVNSTRAASNAILASQRRKAPPAPP
. ::.:. : ... : :::.::: . : .:. :. :: :
XP_011 QAGPPYPVTTIIAPPGHT-------GVACSCHQCLSGSRTGPVSGRYRHSMTNL--PAYP
180 190 200 210 220
240 250 260 270 280
pF1KB3 LPPPPPPG-----GPPGALAVRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGAPGGA
.: :: : :.: . ...:: .:: . .. :: : : :.
XP_011 VPQHPPHRTASVFGTHQAFAPYNKPSLSGAR--SAPRLNTTNAW---GAAPPSLGSQPLY
230 240 250 260 270 280
290 300 310 320 330
pF1KB3 RTPGQNNLNRPGPQR-----TTSVSARASIP------PG-VPALPVKNLNGTGPVHPALA
:. .:.. :::. .:: .. ::.: :: ::: .. . :. :::
XP_011 RS----SLSHLGPQHLPPGSSTSGAVSASLPSGPSSSPGSVPATVPMQMPKPSRVQQALA
290 300 310 320 330
340 350 360 370 380 390
pF1KB3 GMTGILLCAAGLPVCLTRAPKPILHPPPVSKSDVKPVPGVPGVCRKTKKKHLKKSK-NPE
:::..:. : ::::::.:::.: ::.:. : .: . . . : : . .::
XP_011 GMTSVLMSAIGLPVCLSRAPQPT--SPPASRLASKSHGSVKRLRKMSVKGATPKPEPEPE
340 350 360 370 380 390
400 410 420 430 440 450
pF1KB3 DVVRRYMQKVKNPPDEDCTICMERLVTASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCL
.:.. : ...: :::::: ::::.: ::::: : :.. ::.: .:.: .:::::
XP_011 QVIKNYTEELKVPPDEDCIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCL
400 410 420 430 440 450
460 470 480 490 500 510
pF1KB3 VAMYSNGNKDGSLQCPTCKAIYGEKTGTQPPGKMEFHLIPHSLPGFPDTQTIRIVYDIPT
.::: :::::::::::.::.:::::::::: :::: . :::: : :: :::.::
XP_011 LAMYCNGNKDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSIPH
460 470 480 490 500 510
520 530 540 550 560 570
pF1KB3 GIQGPEHPNPGKKFTARGFPRHCYLPNNEKGRKVLRLLITAWERRLIFTIGTSNTTGESD
:::::::::::: ::::::::.::::.: .:::::.:: .::.::::::.:::.::::.:
XP_011 GIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTGETD
520 530 540 550 560 570
580 590 600 610 620
pF1KB3 TVVWNEIHHKTEFGSNLTGHGYPDASYLDNVLAELTAQGVSEAAAKA
::::::::::::. :.::::::: .::.::::::.::::.:
XP_011 TVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ
580 590 600 610 620
>>NP_065943 (OMIM: 613141) probable E3 ubiquitin-protein (622 aa)
initn: 1732 init1: 1108 opt: 1808 Z-score: 793.7 bits: 157.0 E(85289): 1.8e-37
Smith-Waterman score: 1810; 48.2% identity (67.6% similar) in 620 aa overlap (23-615:17-616)
10 20 30 40 50
pF1KB3 MSRPGHGGLMPVNGLGFPPQNVARVVVWEWLNEHSRWRPYTATVCHHIEN--VLKEDAR-
: :.:::: . . :.::.:::: ::. : .. :
NP_065 MAMAPSPSLVQVYTSPAAVAVWEWQDGLGTWHPYSATVCSFIEQQFVQQKGQRF
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 --GSVV----LGQVDAQLVPYIIDLQSMHQFRQDTGTMRPVRRNFYDPSSAPGKGIVWEW
::.. :::.: .:.:::::: : :::::::::: :::... ::::.:.::::
NP_065 GLGSLAHSIPLGQADPSLAPYIIDLPSWTQFRQDTGTMRAVRRHLFPQHSAPGRGVVWEW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 ENDGGAWTAYDMDICITIQNAYEKQHPWLDLSSLGFCYLIYFNSMSQMNRQTRRRRRLRR
.: :.::::. ..: ... . . .::. ::. : . ... .: :. . : .::
NP_065 LSDDGSWTAYEASVCDYLEQQVARGNQLVDLAPLGYNYTVNYTTHTQTNKTSSFCRSVRR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 RLDLAYPLTVGSIPKSQSWPVGASSGQPCSCQQCLLVNSTRAASNAILASQRRKAPPAPP
. ::.:. : ... : :::.::: . : .:. :. :: :
NP_065 QAGPPYPVTTIIAPPGHT-------GVACSCHQCLSGSRTGPVSGRYRHSMTNL--PAYP
180 190 200 210 220
240 250 260 270 280
pF1KB3 LPPPPPPG-----GPPGALAVRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGAPGGA
.: :: : :.: . ...:: .:: . .. :: : : :.
NP_065 VPQHPPHRTASVFGTHQAFAPYNKPSLSGAR--SAPRLNTTNAW---GAAPPSLGSQPLY
230 240 250 260 270 280
290 300 310 320 330
pF1KB3 RTPGQNNLNRPGPQR-----TTSVSARASIP------PG-VPALPVKNLNGTGPVHPALA
:. .:.. :::. .:: .. ::.: :: ::: .. . :. :::
NP_065 RS----SLSHLGPQHLPPGSSTSGAVSASLPSGPSSSPGSVPATVPMQMPKPSRVQQALA
290 300 310 320 330
340 350 360 370 380 390
pF1KB3 GMTGILLCAAGLPVCLTRAPKPILHPPPVSKSDVKPVPGVPGVCRKTKKKHLKKSK-NPE
:::..:. : ::::::.:::.: ::.:. : .: . . . : : . .::
NP_065 GMTSVLMSAIGLPVCLSRAPQPT--SPPASRLASKSHGSVKRLRKMSVKGATPKPEPEPE
340 350 360 370 380 390
400 410 420 430 440 450
pF1KB3 DVVRRYMQKVKNPPDEDCTICMERLVTASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCL
.:.. : ...: :::::: ::::.: ::::: : :.. ::.: .:.: .:::::
NP_065 QVIKNYTEELKVPPDEDCIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCL
400 410 420 430 440 450
460 470 480 490 500 510
pF1KB3 VAMYSNGNKDGSLQCPTCKAIYGEKTGTQPPGKMEFHLIPHSLPGFPDTQTIRIVYDIPT
.::: :::::::::::.::.:::::::::: :::: . :::: : :: :::.::
NP_065 LAMYCNGNKDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSIPH
460 470 480 490 500 510
520 530 540 550 560 570
pF1KB3 GIQGPEHPNPGKKFTARGFPRHCYLPNNEKGRKVLRLLITAWERRLIFTIGTSNTTGESD
:::::::::::: ::::::::.::::.: .:::::.:: .::.::::::.:::.::::.:
NP_065 GIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTGETD
520 530 540 550 560 570
580 590 600 610 620
pF1KB3 TVVWNEIHHKTEFGSNLTGHGYPDASYLDNVLAELTAQGVSEAAAKA
::::::::::::. :.::::::: .::.::::::.::::.:
NP_065 TVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ
580 590 600 610 620
>>XP_011514076 (OMIM: 613141) PREDICTED: probable E3 ubi (622 aa)
initn: 1732 init1: 1108 opt: 1808 Z-score: 793.7 bits: 157.0 E(85289): 1.8e-37
Smith-Waterman score: 1810; 48.2% identity (67.6% similar) in 620 aa overlap (23-615:17-616)
10 20 30 40 50
pF1KB3 MSRPGHGGLMPVNGLGFPPQNVARVVVWEWLNEHSRWRPYTATVCHHIEN--VLKEDAR-
: :.:::: . . :.::.:::: ::. : .. :
XP_011 MAMAPSPSLVQVYTSPAAVAVWEWQDGLGTWHPYSATVCSFIEQQFVQQKGQRF
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 --GSVV----LGQVDAQLVPYIIDLQSMHQFRQDTGTMRPVRRNFYDPSSAPGKGIVWEW
::.. :::.: .:.:::::: : :::::::::: :::... ::::.:.::::
XP_011 GLGSLAHSIPLGQADPSLAPYIIDLPSWTQFRQDTGTMRAVRRHLFPQHSAPGRGVVWEW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 ENDGGAWTAYDMDICITIQNAYEKQHPWLDLSSLGFCYLIYFNSMSQMNRQTRRRRRLRR
.: :.::::. ..: ... . . .::. ::. : . ... .: :. . : .::
XP_011 LSDDGSWTAYEASVCDYLEQQVARGNQLVDLAPLGYNYTVNYTTHTQTNKTSSFCRSVRR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 RLDLAYPLTVGSIPKSQSWPVGASSGQPCSCQQCLLVNSTRAASNAILASQRRKAPPAPP
. ::.:. : ... : :::.::: . : .:. :. :: :
XP_011 QAGPPYPVTTIIAPPGHT-------GVACSCHQCLSGSRTGPVSGRYRHSMTNL--PAYP
180 190 200 210 220
240 250 260 270 280
pF1KB3 LPPPPPPG-----GPPGALAVRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGAPGGA
.: :: : :.: . ...:: .:: . .. :: : : :.
XP_011 VPQHPPHRTASVFGTHQAFAPYNKPSLSGAR--SAPRLNTTNAW---GAAPPSLGSQPLY
230 240 250 260 270 280
290 300 310 320 330
pF1KB3 RTPGQNNLNRPGPQR-----TTSVSARASIP------PG-VPALPVKNLNGTGPVHPALA
:. .:.. :::. .:: .. ::.: :: ::: .. . :. :::
XP_011 RS----SLSHLGPQHLPPGSSTSGAVSASLPSGPSSSPGSVPATVPMQMPKPSRVQQALA
290 300 310 320 330
340 350 360 370 380 390
pF1KB3 GMTGILLCAAGLPVCLTRAPKPILHPPPVSKSDVKPVPGVPGVCRKTKKKHLKKSK-NPE
:::..:. : ::::::.:::.: ::.:. : .: . . . : : . .::
XP_011 GMTSVLMSAIGLPVCLSRAPQPT--SPPASRLASKSHGSVKRLRKMSVKGATPKPEPEPE
340 350 360 370 380 390
400 410 420 430 440 450
pF1KB3 DVVRRYMQKVKNPPDEDCTICMERLVTASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCL
.:.. : ...: :::::: ::::.: ::::: : :.. ::.: .:.: .:::::
XP_011 QVIKNYTEELKVPPDEDCIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCL
400 410 420 430 440 450
460 470 480 490 500 510
pF1KB3 VAMYSNGNKDGSLQCPTCKAIYGEKTGTQPPGKMEFHLIPHSLPGFPDTQTIRIVYDIPT
.::: :::::::::::.::.:::::::::: :::: . :::: : :: :::.::
XP_011 LAMYCNGNKDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSIPH
460 470 480 490 500 510
520 530 540 550 560 570
pF1KB3 GIQGPEHPNPGKKFTARGFPRHCYLPNNEKGRKVLRLLITAWERRLIFTIGTSNTTGESD
:::::::::::: ::::::::.::::.: .:::::.:: .::.::::::.:::.::::.:
XP_011 GIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTGETD
520 530 540 550 560 570
580 590 600 610 620
pF1KB3 TVVWNEIHHKTEFGSNLTGHGYPDASYLDNVLAELTAQGVSEAAAKA
::::::::::::. :.::::::: .::.::::::.::::.:
XP_011 TVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ
580 590 600 610 620
620 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:35:19 2016 done: Thu Nov 3 12:35:20 2016
Total Scan time: 11.880 Total Display time: 0.150
Function used was FASTA [36.3.4 Apr, 2011]