FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3238, 732 aa
  1>>>pF1KB3238 732 - 732 aa - 732 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2476+/-0.000424; mu= 21.0584+/- 0.027
 mean_var=75.8003+/-15.055, 0's: 0 Z-trim(111.4): 23  B-trim: 88 in 1/49
 Lambda= 0.147312
 statistics sampled from 19913 (19932) to 19913 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.593), E-opt: 0.2 (0.234), width:  16
 Scan time:  9.570

The best scores are:                                      opt bits E(85289)
NP_066964 (OMIM: 194364) X-ray repair cross-comple ( 732) 4800 1030.3       0


>>NP_066964 (OMIM: 194364) X-ray repair cross-complement  (732 aa)
 initn: 4800 init1: 4800 opt: 4800  Z-score: 5510.6  bits: 1030.3 E(85289):    0
Smith-Waterman score: 4800; 100.0% identity (100.0% similar) in 732 aa overlap (1-732:1-732)

               10        20        30        40        50        60
pF1KB3 MVRSGNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MVRSGNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 TDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 TDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 ETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 ETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 GPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLRKLCVFKKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 GPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLRKLCVFKKI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 ERHSIHWPCRLTIGSNLSIRIAAYKSILQERVKKTWTVVDAKTLKKEDIQKETVYCLNDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 ERHSIHWPCRLTIGSNLSIRIAAYKSILQERVKKTWTVVDAKTLKKEDIQKETVYCLNDD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 DETEVLKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 DETEVLKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 VLKVFAARDDEAAAVALSSLIHALDDLDMVAIVRYAYDKRANPQVGVAFPHIKHNYECLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 VLKVFAARDDEAAAVALSSLIHALDDLDMVAIVRYAYDKRANPQVGVAFPHIKHNYECLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 YVQLPFMEDLRQYMFSSLKNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 YVQLPFMEDLRQYMFSSLKNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 KIPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 KIPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 EAKKKDQVTAQEIFQDNHEDGPTAKKLKTEQGGAHFSVSSLAEGSVTSVGSVNPAENFRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 EAKKKDQVTAQEIFQDNHEDGPTAKKLKTEQGGAHFSVSSLAEGSVTSVGSVNPAENFRV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 LVKQKKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LVKQKKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 ALQEKVEIKQLNHFWEIVVQDGITLITKEEASGSSVTAEEAKKFLAPKDKPSGDTAAVFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 ALQEKVEIKQLNHFWEIVVQDGITLITKEEASGSSVTAEEAKKFLAPKDKPSGDTAAVFE
              670       680       690       700       710       720

              730  
pF1KB3 EGGDVDDLLDMI
       ::::::::::::
NP_066 EGGDVDDLLDMI
              730  




732 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:27:22 2016 done: Sat Nov  5 02:27:24 2016
 Total Scan time:  9.570 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]