Result of FASTA (ccds) for
pF1KB3247
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3247, 361 aa
1>>>pF1KB3247 361 - 361 aa - 361 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7504+/-0.000841; mu= 15.5941+/- 0.051
mean_var=92.4296+/-18.412, 0's: 0 Z-trim(108.5): 22 B-trim: 0 in 0/53
Lambda= 0.133404
statistics sampled from 10205 (10222) to 10205 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.314), width: 16
Scan time: 2.620
The best scores are: opt bits E(32554)
CCDS31457.1 CD44 gene_id:960|Hs108|chr11 ( 361) 2443 480.2 1.2e-135
CCDS55755.1 CD44 gene_id:960|Hs108|chr11 ( 340) 1551 308.5 5.6e-84
CCDS55754.1 CD44 gene_id:960|Hs108|chr11 ( 429) 1541 306.6 2.5e-83
CCDS31456.1 CD44 gene_id:960|Hs108|chr11 ( 493) 1534 305.3 7.1e-83
CCDS31455.1 CD44 gene_id:960|Hs108|chr11 ( 699) 1531 304.9 1.4e-82
CCDS7897.1 CD44 gene_id:960|Hs108|chr11 ( 742) 1527 304.1 2.5e-82
CCDS31458.1 CD44 gene_id:960|Hs108|chr11 ( 139) 536 112.8 1.8e-25
>>CCDS31457.1 CD44 gene_id:960|Hs108|chr11 (361 aa)
initn: 2443 init1: 2443 opt: 2443 Z-score: 2548.7 bits: 480.2 E(32554): 1.2e-135
Smith-Waterman score: 2443; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KB3 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGGSHTTHGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGGSHTTHGS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 ESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 LVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQNVDMKIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQNVDMKIG
310 320 330 340 350 360
pF1KB3 V
:
CCDS31 V
>>CCDS55755.1 CD44 gene_id:960|Hs108|chr11 (340 aa)
initn: 1541 init1: 1541 opt: 1551 Z-score: 1621.2 bits: 308.5 E(32554): 5.6e-84
Smith-Waterman score: 2239; 94.2% identity (94.2% similar) in 361 aa overlap (1-361:1-340)
10 20 30 40 50 60
pF1KB3 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGGSHTTHGS
:::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATR-----------------
190 200 210 220
250 260 270 280 290 300
pF1KB3 ESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ----HSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKK
230 240 250 260 270
310 320 330 340 350 360
pF1KB3 LVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQNVDMKIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQNVDMKIG
280 290 300 310 320 330
pF1KB3 V
:
CCDS55 V
340
>>CCDS55754.1 CD44 gene_id:960|Hs108|chr11 (429 aa)
initn: 1574 init1: 1535 opt: 1541 Z-score: 1609.4 bits: 306.6 E(32554): 2.5e-83
Smith-Waterman score: 2058; 82.4% identity (82.4% similar) in 393 aa overlap (1-325:1-393)
10 20 30 40 50 60
pF1KB3 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220
pF1KB3 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATR-----------------
::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATNRNDVTGGRRDPNHSEGS
190 200 210 220 230 240
230
pF1KB3 ---------------------------------------------------DQDTFHPSG
:::::::::
CCDS55 TTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNRSLSGDQDTFHPSG
250 260 270 280 290 300
240 250 260 270 280 290
pF1KB3 GSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSR
310 320 330 340 350 360
300 310 320 330 340 350
pF1KB3 RRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNL
:::::::::::::::::::::::::::::::::
CCDS55 RRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNL
370 380 390 400 410 420
360
pF1KB3 QNVDMKIGV
CCDS55 QNVDMKIGV
>>CCDS31456.1 CD44 gene_id:960|Hs108|chr11 (493 aa)
initn: 2422 init1: 1527 opt: 1534 Z-score: 1601.3 bits: 305.3 E(32554): 7.1e-83
Smith-Waterman score: 1534; 97.8% identity (99.1% similar) in 229 aa overlap (1-229:1-228)
10 20 30 40 50 60
pF1KB3 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGGSHTTHGS
:::::::::::::::::::::::::::::::::::::::::: ..:. :
CCDS31 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT-NMDSSHSITLQPTANPN
190 200 210 220 230
250 260 270 280 290 300
pF1KB3 ESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKK
CCDS31 TGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDVTGGRRDPN
240 250 260 270 280 290
>--
initn: 937 init1: 909 opt: 918 Z-score: 960.6 bits: 186.8 E(32554): 3.5e-47
Smith-Waterman score: 918; 60.4% identity (72.3% similar) in 278 aa overlap (89-361:234-493)
60 70 80 90 100 110
pF1KB3 TLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYC
: .::. . . . :. .:.: ..
CCDS31 IPDEDSPWITDSTDRIPATNMDSSHSITLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQS
210 220 230 240 250 260
120 130 140 150 160 170
pF1KB3 FNASAPP-EEDCTSVTDLPNAFDGPITITIVNRD----GTRYVQKGEYRTNPEDIYPSNP
:..: ::: : :.. :.: ::. : : ...: :. . : :.
CCDS31 FSTSHEGLEED----KDHPTTS----TLTSSNRNDVTGGRRDPNHSEGSTTLLEGYTSHY
270 280 290 300 310
180 190 200 210 220 230
pF1KB3 TDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGG
: :. .:.. :. . : .: ...: . ::::::::::
CCDS31 PHTKESRTFIPVTSAKTGSFGV----TAVTVGDSNS-----NVNR-SLSGDQDTFHPSGG
320 330 340 350 360
240 250 260 270 280 290
pF1KB3 SHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRR
370 380 390 400 410 420
300 310 320 330 340 350
pF1KB3 RCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQ
430 440 450 460 470 480
360
pF1KB3 NVDMKIGV
::::::::
CCDS31 NVDMKIGV
490
>>CCDS31455.1 CD44 gene_id:960|Hs108|chr11 (699 aa)
initn: 2422 init1: 1527 opt: 1531 Z-score: 1596.1 bits: 304.9 E(32554): 1.4e-82
Smith-Waterman score: 1531; 90.5% identity (94.4% similar) in 252 aa overlap (1-252:1-251)
10 20 30 40 50 60
pF1KB3 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGGSHTTHGS
:::::::::::::::::::::::::::::::::::::::::: ... :.: . .. .
CCDS31 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATSTSSNT-ISAGWEPNEEN
190 200 210 220 230
250 260 270 280 290 300
pF1KB3 ESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKK
:.. : : :
CCDS31 EDERDRHLSFSGSGIDDDEDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTT
240 250 260 270 280 290
>--
initn: 963 init1: 909 opt: 918 Z-score: 958.5 bits: 186.9 E(32554): 4.6e-47
Smith-Waterman score: 918; 60.4% identity (72.3% similar) in 278 aa overlap (89-361:440-699)
60 70 80 90 100 110
pF1KB3 TLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYC
: .::. . . . :. .:.: ..
CCDS31 FFNPISHPMGRGHQAGRRMDMDSSHSITLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQS
410 420 430 440 450 460
120 130 140 150 160 170
pF1KB3 FNASAPP-EEDCTSVTDLPNAFDGPITITIVNRD----GTRYVQKGEYRTNPEDIYPSNP
:..: ::: : :.. :.: ::. : : ...: :. . : :.
CCDS31 FSTSHEGLEED----KDHPTTS----TLTSSNRNDVTGGRRDPNHSEGSTTLLEGYTSHY
470 480 490 500 510 520
180 190 200 210 220 230
pF1KB3 TDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGG
: :. .:.. :. . : .: ...: . ::::::::::
CCDS31 PHTKESRTFIPVTSAKTGSFGV----TAVTVGDSNS-----NVNR-SLSGDQDTFHPSGG
530 540 550 560 570
240 250 260 270 280 290
pF1KB3 SHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRR
580 590 600 610 620 630
300 310 320 330 340 350
pF1KB3 RCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQ
640 650 660 670 680 690
360
pF1KB3 NVDMKIGV
::::::::
CCDS31 NVDMKIGV
>>CCDS7897.1 CD44 gene_id:960|Hs108|chr11 (742 aa)
initn: 2422 init1: 1527 opt: 1527 Z-score: 1591.6 bits: 304.1 E(32554): 2.5e-82
Smith-Waterman score: 1527; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KB3 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGGSHTTHGS
::::::::::::::::::::::::::::::::::::::::::
CCDS78 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 ESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKK
CCDS78 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
250 260 270 280 290 300
>--
initn: 964 init1: 909 opt: 918 Z-score: 958.1 bits: 186.9 E(32554): 4.8e-47
Smith-Waterman score: 918; 60.4% identity (72.3% similar) in 278 aa overlap (89-361:483-742)
60 70 80 90 100 110
pF1KB3 TLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYC
: .::. . . . :. .:.: ..
CCDS78 FFNPISHPMGRGHQAGRRMDMDSSHSITLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQS
460 470 480 490 500 510
120 130 140 150 160 170
pF1KB3 FNASAPP-EEDCTSVTDLPNAFDGPITITIVNRD----GTRYVQKGEYRTNPEDIYPSNP
:..: ::: : :.. :.: ::. : : ...: :. . : :.
CCDS78 FSTSHEGLEED----KDHPTTS----TLTSSNRNDVTGGRRDPNHSEGSTTLLEGYTSHY
520 530 540 550 560
180 190 200 210 220 230
pF1KB3 TDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGG
: :. .:.. :. . : .: ...: . ::::::::::
CCDS78 PHTKESRTFIPVTSAKTGSFGV----TAVTVGDSNS-----NVNR-SLSGDQDTFHPSGG
570 580 590 600 610
240 250 260 270 280 290
pF1KB3 SHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRR
620 630 640 650 660 670
300 310 320 330 340 350
pF1KB3 RCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQ
680 690 700 710 720 730
360
pF1KB3 NVDMKIGV
::::::::
CCDS78 NVDMKIGV
740
>>CCDS31458.1 CD44 gene_id:960|Hs108|chr11 (139 aa)
initn: 555 init1: 536 opt: 536 Z-score: 570.8 bits: 112.8 E(32554): 1.8e-25
Smith-Waterman score: 536; 100.0% identity (100.0% similar) in 77 aa overlap (1-77:1-77)
10 20 30 40 50 60
pF1KB3 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
:::::::::::::::::
CCDS31 PTMAQMEKALSIGFETCSLHCSQQSKKVWAEEKASDQQWQWSCGGQKAKWTQRRGQQVSG
70 80 90 100 110 120
361 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:52:44 2016 done: Thu Nov 3 20:52:44 2016
Total Scan time: 2.620 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]