Result of FASTA (ccds) for
pF1KB3283
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3283, 1189 aa
1>>>pF1KB3283 1189 - 1189 aa - 1189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6161+/-0.000875; mu= 14.4728+/- 0.053
mean_var=194.8709+/-38.553, 0's: 0 Z-trim(114.6): 43 B-trim: 139 in 1/51
Lambda= 0.091876
statistics sampled from 15093 (15131) to 15093 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.465), width: 16
Scan time: 6.180
The best scores are: opt bits E(32554)
CCDS6022.1 HR gene_id:55806|Hs108|chr8 (1189) 8569 1149.1 0
CCDS6023.1 HR gene_id:55806|Hs108|chr8 (1134) 7754 1041.1 0
>>CCDS6022.1 HR gene_id:55806|Hs108|chr8 (1189 aa)
initn: 8569 init1: 8569 opt: 8569 Z-score: 6145.4 bits: 1149.1 E(32554): 0
Smith-Waterman score: 8569; 99.9% identity (99.9% similar) in 1189 aa overlap (1-1189:1-1189)
10 20 30 40 50 60
pF1KB3 MESTPSFLKGTPTWEKTAPENGIVRQEPGSPPRDGLHHGPLCLGEPAPFWRGVLSTPDSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MESTPSFLKGTPTWEKTAPENGIVRQEPGSPPRDGLHHGPLCLGEPAPFWRGVLSTPDSW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LPPGFPQGPKDMLPLVEGEGPQNGERKVNWLGSKEGLRWKEAMLTHPLAFCGPACPPRCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LPPGFPQGPKDMLPLVEGEGPQNGERKVNWLGSKEGLRWKEAMLTHPLAFCGPACPPRCG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 PLMPEHSGGHLKSDPVAFRPWHCPFLLETKILERAPFWVPTCLPPYLVSGLPPEHPCDWP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PLMPEHSGGHLKSDPVAFRPWHCPFLLETKILERAPFWVPTCLPPYLVSGLPPEHPCDWP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LTPHPWVYSGGQPKVPSAFSLGSKGFYYKDPSIPRLAKEPLAAAEPGLFGLNSGGHLQRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LTPHPWVYSGGQPKVPSAFSLGSKGFYYKDPSIPRLAKEPLAAAEPGLFGLNSGGHLQRA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 GEAERPSLHQRDGEMGAGRQQNPCPLFLGQPDTVPWTSWPACPPGLVHTLGNVWAGPGDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GEAERPSLHQRDGEMGAGRQQNPCPLFLGQPDTVPWTSWPACPPGLVHTLGNVWAGPGDG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 NLGYQLGPPATPRCPSPEPPVTQRGCCSSYPPTKGGDLGPCGKCQEGLEGGASGASEPSE
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS60 NLGYQLGPPATPRCPSPEPPVTQRGCCSSYPPTKGGGLGPCGKCQEGLEGGASGASEPSE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EVNKASGPRACPPSHHTKLKKTWLTRHSEQFECPRGCPEVEERPVARLRALKRAGSPEVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EVNKASGPRACPPSHHTKLKKTWLTRHSEQFECPRGCPEVEERPVARLRALKRAGSPEVQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 GAMGSPAPKRPPDPFPGTAEQGAGGWQEVRDTSIGNKDVDSGQHDEQKGPQDGQASLQDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GAMGSPAPKRPPDPFPGTAEQGAGGWQEVRDTSIGNKDVDSGQHDEQKGPQDGQASLQDP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 GLQDIPCLALPAKLAQCQSCAQAAGEGGGHACHSQQVRRSPLGGELQQEEDTATNSSSEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GLQDIPCLALPAKLAQCQSCAQAAGEGGGHACHSQQVRRSPLGGELQQEEDTATNSSSEE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GPGSGPDSRLSTGLAKHLLSGLGDRLCRLLRREREALAWAQREGQGPAVTEDSPGIPRCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GPGSGPDSRLSTGLAKHLLSGLGDRLCRLLRREREALAWAQREGQGPAVTEDSPGIPRCC
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 SRCHHGLFNTHWRCPRCSHRLCVACGRVAGTGRAREKAGFQEQSAEECTQEAGHAACSLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SRCHHGLFNTHWRCPRCSHRLCVACGRVAGTGRAREKAGFQEQSAEECTQEAGHAACSLM
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 LTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQADARVWAPGDAGQQKESTQKTPPTPQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQADARVWAPGDAGQQKESTQKTPPTPQP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 SCNGDTHRTKSIKEETPDSAETPAEDRAGRGPLPCPSLCELLASTAVKLCLGHERIHMAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SCNGDTHRTKSIKEETPDSAETPAEDRAGRGPLPCPSLCELLASTAVKLCLGHERIHMAF
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 APVTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGPGLRKGLGLPLSPVRPRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 APVTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGPGLRKGLGLPLSPVRPRLP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 PPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNLWGTEALGALGGQVQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNLWGTEALGALGGQVQA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB3 LSPLGPPQPSSLGSTTFWEGFSWPELRPKSDEGSVLLLHRALGDEDTSRVENLAASLPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LSPLGPPQPSSLGSTTFWEGFSWPELRPKSDEGSVLLLHRALGDEDTSRVENLAASLPLP
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB3 EYCALHGKLNLASYLPPGLALRPLEPQLWAAYGVSPHRGHLGTKNLCVEVADLVSILVHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EYCALHGKLNLASYLPPGLALRPLEPQLWAAYGVSPHRGHLGTKNLCVEVADLVSILVHA
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB3 DTPLPAWHRAQKDFLSGLDGEGLWSPGSQVSTVWHVFRAQDAQRIRRFLQMVCPAGAGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 DTPLPAWHRAQKDFLSGLDGEGLWSPGSQVSTVWHVFRAQDAQRIRRFLQMVCPAGAGAL
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB3 EPGAPGSCYLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQGLVSTVSVTQHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EPGAPGSCYLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQGLVSTVSVTQHF
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180
pF1KB3 LSPETSALSAQLCHQGPSLPPDCHLLYAQMDWAVFQAVKVAVGTLQEAK
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LSPETSALSAQLCHQGPSLPPDCHLLYAQMDWAVFQAVKVAVGTLQEAK
1150 1160 1170 1180
>>CCDS6023.1 HR gene_id:55806|Hs108|chr8 (1134 aa)
initn: 7754 init1: 7754 opt: 7754 Z-score: 5561.8 bits: 1041.1 E(32554): 0
Smith-Waterman score: 8049; 95.3% identity (95.3% similar) in 1189 aa overlap (1-1189:1-1134)
10 20 30 40 50 60
pF1KB3 MESTPSFLKGTPTWEKTAPENGIVRQEPGSPPRDGLHHGPLCLGEPAPFWRGVLSTPDSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MESTPSFLKGTPTWEKTAPENGIVRQEPGSPPRDGLHHGPLCLGEPAPFWRGVLSTPDSW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LPPGFPQGPKDMLPLVEGEGPQNGERKVNWLGSKEGLRWKEAMLTHPLAFCGPACPPRCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LPPGFPQGPKDMLPLVEGEGPQNGERKVNWLGSKEGLRWKEAMLTHPLAFCGPACPPRCG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 PLMPEHSGGHLKSDPVAFRPWHCPFLLETKILERAPFWVPTCLPPYLVSGLPPEHPCDWP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PLMPEHSGGHLKSDPVAFRPWHCPFLLETKILERAPFWVPTCLPPYLVSGLPPEHPCDWP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LTPHPWVYSGGQPKVPSAFSLGSKGFYYKDPSIPRLAKEPLAAAEPGLFGLNSGGHLQRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LTPHPWVYSGGQPKVPSAFSLGSKGFYYKDPSIPRLAKEPLAAAEPGLFGLNSGGHLQRA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 GEAERPSLHQRDGEMGAGRQQNPCPLFLGQPDTVPWTSWPACPPGLVHTLGNVWAGPGDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GEAERPSLHQRDGEMGAGRQQNPCPLFLGQPDTVPWTSWPACPPGLVHTLGNVWAGPGDG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 NLGYQLGPPATPRCPSPEPPVTQRGCCSSYPPTKGGDLGPCGKCQEGLEGGASGASEPSE
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS60 NLGYQLGPPATPRCPSPEPPVTQRGCCSSYPPTKGGGLGPCGKCQEGLEGGASGASEPSE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EVNKASGPRACPPSHHTKLKKTWLTRHSEQFECPRGCPEVEERPVARLRALKRAGSPEVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EVNKASGPRACPPSHHTKLKKTWLTRHSEQFECPRGCPEVEERPVARLRALKRAGSPEVQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 GAMGSPAPKRPPDPFPGTAEQGAGGWQEVRDTSIGNKDVDSGQHDEQKGPQDGQASLQDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GAMGSPAPKRPPDPFPGTAEQGAGGWQEVRDTSIGNKDVDSGQHDEQKGPQDGQASLQDP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 GLQDIPCLALPAKLAQCQSCAQAAGEGGGHACHSQQVRRSPLGGELQQEEDTATNSSSEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GLQDIPCLALPAKLAQCQSCAQAAGEGGGHACHSQQVRRSPLGGELQQEEDTATNSSSEE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GPGSGPDSRLSTGLAKHLLSGLGDRLCRLLRREREALAWAQREGQGPAVTEDSPGIPRCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GPGSGPDSRLSTGLAKHLLSGLGDRLCRLLRREREALAWAQREGQGPAVTEDSPGIPRCC
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 SRCHHGLFNTHWRCPRCSHRLCVACGRVAGTGRAREKAGFQEQSAEECTQEAGHAACSLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SRCHHGLFNTHWRCPRCSHRLCVACGRVAGTGRAREKAGFQEQSAEECTQEAGHAACSLM
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 LTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQADARVWAPGDAGQQKESTQKTPPTPQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQADARVWAPGDAGQQKESTQKTPPTPQP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 SCNGDTHRTKSIKEETPDSAETPAEDRAGRGPLPCPSLCELLASTAVKLCLGHERIHMAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SCNGDTHRTKSIKEETPDSAETPAEDRAGRGPLPCPSLCELLASTAVKLCLGHERIHMAF
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 APVTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGPGLRKGLGLPLSPVRPRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 APVTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGPGLRKGLGLPLSPVRPRLP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 PPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNLWGTEALGALGGQVQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNLWGTEALGALGGQVQA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB3 LSPLGPPQPSSLGSTTFWEGFSWPELRPKSDEGSVLLLHRALGDEDTSRVENLAASLPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LSPLGPPQPSSLGSTTFWEGFSWPELRPKSDEGSVLLLHRALGDEDTSRVENLAASLPLP
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB3 EYCALHGKLNLASYLPPGLALRPLEPQLWAAYGVSPHRGHLGTKNLCVEVADLVSILVHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EYCALHGKLNLASYLPPGLALRPLEPQLWAAYGVSPHRGHLGTKNLCVEVADLVSILVHA
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB3 DTPLPAWHRAQKDFLSGLDGEGLWSPGSQVSTVWHVFRAQDAQRIRRFLQMVCPAGAGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 DTPLPAWHRAQKDFLSGLDGEGLWSPGSQVSTVWHVFRAQDAQRIRRFLQMV--------
1030 1040 1050 1060 1070
1090 1100 1110 1120 1130 1140
pF1KB3 EPGAPGSCYLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQGLVSTVSVTQHF
:::::::::::::
CCDS60 -----------------------------------------------QGLVSTVSVTQHF
1080
1150 1160 1170 1180
pF1KB3 LSPETSALSAQLCHQGPSLPPDCHLLYAQMDWAVFQAVKVAVGTLQEAK
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LSPETSALSAQLCHQGPSLPPDCHLLYAQMDWAVFQAVKVAVGTLQEAK
1090 1100 1110 1120 1130
1189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:43:31 2016 done: Thu Nov 3 12:43:32 2016
Total Scan time: 6.180 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]