Result of FASTA (omim) for
pF1KB3288
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3288, 744 aa
1>>>pF1KB3288 744 - 744 aa - 744 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 15.2999+/-0.000579; mu= -22.7985+/- 0.036
mean_var=809.5810+/-168.595, 0's: 0 Z-trim(123.0): 637 B-trim: 1378 in 1/60
Lambda= 0.045076
statistics sampled from 41380 (42113) to 41380 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.494), width: 16
Scan time: 15.300
The best scores are: opt bits E(85289)
NP_065084 (OMIM: 120251) collagen alpha-1(VIII) ch ( 744) 5593 379.5 2.6e-104
NP_001841 (OMIM: 120251) collagen alpha-1(VIII) ch ( 744) 5593 379.5 2.6e-104
NP_005193 (OMIM: 120252,136800,609140) collagen al ( 703) 2644 187.7 1.4e-46
XP_005270534 (OMIM: 120252,136800,609140) PREDICTE ( 780) 2644 187.8 1.5e-46
NP_001281276 (OMIM: 120252,136800,609140) collagen ( 638) 2624 186.4 3.1e-46
XP_016865738 (OMIM: 120110,156500) PREDICTED: coll ( 680) 1942 142.1 7.3e-33
XP_011533735 (OMIM: 120110,156500) PREDICTED: coll ( 680) 1942 142.1 7.3e-33
XP_016865737 (OMIM: 120110,156500) PREDICTED: coll ( 680) 1942 142.1 7.3e-33
XP_006715396 (OMIM: 120110,156500) PREDICTED: coll ( 680) 1942 142.1 7.3e-33
NP_000484 (OMIM: 120110,156500) collagen alpha-1(X ( 680) 1942 142.1 7.3e-33
XP_011533734 (OMIM: 120110,156500) PREDICTED: coll ( 680) 1942 142.1 7.3e-33
XP_016884751 (OMIM: 301050,303630) PREDICTED: coll (1289) 1629 122.0 1.5e-26
XP_016884750 (OMIM: 301050,303630) PREDICTED: coll (1330) 1629 122.0 1.6e-26
XP_016869755 (OMIM: 120215,130000) PREDICTED: coll (1715) 1631 122.3 1.7e-26
NP_001265003 (OMIM: 120215,130000) collagen alpha- (1838) 1631 122.3 1.8e-26
NP_000084 (OMIM: 120215,130000) collagen alpha-1(V (1838) 1631 122.3 1.8e-26
NP_000486 (OMIM: 301050,303630) collagen alpha-5(I (1685) 1629 122.1 1.8e-26
XP_016884749 (OMIM: 301050,303630) PREDICTED: coll (1690) 1629 122.1 1.8e-26
NP_203699 (OMIM: 301050,303630) collagen alpha-5(I (1691) 1629 122.1 1.8e-26
XP_016884748 (OMIM: 301050,303630) PREDICTED: coll (1693) 1629 122.1 1.8e-26
XP_011529151 (OMIM: 301050,303630) PREDICTED: coll (1696) 1629 122.1 1.8e-26
XP_016855826 (OMIM: 120280,154780,228520,603932,60 (1323) 1613 121.0 3.2e-26
XP_016855825 (OMIM: 120280,154780,228520,603932,60 (1515) 1613 121.0 3.5e-26
NP_542197 (OMIM: 120280,154780,228520,603932,60484 (1690) 1613 121.1 3.8e-26
NP_001177638 (OMIM: 120280,154780,228520,603932,60 (1767) 1613 121.1 3.9e-26
NP_001845 (OMIM: 120280,154780,228520,603932,60484 (1806) 1613 121.1 4e-26
NP_542196 (OMIM: 120280,154780,228520,603932,60484 (1818) 1613 121.1 4e-26
XP_016855824 (OMIM: 120280,154780,228520,603932,60 (1855) 1613 121.1 4e-26
XP_016855823 (OMIM: 120280,154780,228520,603932,60 (1857) 1613 121.1 4e-26
XP_016884752 (OMIM: 301050,303630) PREDICTED: coll (1136) 1586 119.2 9.7e-26
NP_000081 (OMIM: 120180,130020,130050) collagen al (1466) 1577 118.7 1.7e-25
XP_011515191 (OMIM: 610026) PREDICTED: collagen al (1058) 1539 116.1 7.7e-25
XP_016868641 (OMIM: 610026) PREDICTED: collagen al (1264) 1539 116.2 8.7e-25
XP_011515189 (OMIM: 610026) PREDICTED: collagen al (1264) 1539 116.2 8.7e-25
XP_016868640 (OMIM: 610026) PREDICTED: collagen al (1552) 1539 116.2 1e-24
XP_016868639 (OMIM: 610026) PREDICTED: collagen al (1564) 1539 116.2 1e-24
XP_011515188 (OMIM: 610026) PREDICTED: collagen al (1577) 1539 116.3 1e-24
XP_011515187 (OMIM: 610026) PREDICTED: collagen al (1588) 1539 116.3 1e-24
XP_011515186 (OMIM: 610026) PREDICTED: collagen al (1593) 1539 116.3 1e-24
XP_011515185 (OMIM: 610026) PREDICTED: collagen al (1606) 1539 116.3 1e-24
XP_016865740 (OMIM: 120290,184840,215150,277610,60 (1342) 1534 115.9 1.1e-24
XP_011512604 (OMIM: 120290,184840,215150,277610,60 (1365) 1534 115.9 1.1e-24
XP_011512602 (OMIM: 120290,184840,215150,277610,60 (1438) 1534 115.9 1.2e-24
XP_011512601 (OMIM: 120290,184840,215150,277610,60 (1498) 1534 115.9 1.2e-24
NP_542410 (OMIM: 120290,184840,215150,277610,60186 (1629) 1534 115.9 1.3e-24
NP_542412 (OMIM: 120290,184840,215150,277610,60186 (1650) 1534 115.9 1.3e-24
XP_016865739 (OMIM: 120290,184840,215150,277610,60 (1736) 1534 116.0 1.4e-24
NP_542411 (OMIM: 120290,184840,215150,277610,60186 (1736) 1534 116.0 1.4e-24
XP_011526344 (OMIM: 120216) PREDICTED: collagen al (1744) 1520 115.1 2.6e-24
NP_056534 (OMIM: 120216) collagen alpha-3(V) chain (1745) 1520 115.1 2.6e-24
>>NP_065084 (OMIM: 120251) collagen alpha-1(VIII) chain (744 aa)
initn: 5593 init1: 5593 opt: 5593 Z-score: 1993.6 bits: 379.5 E(85289): 2.6e-104
Smith-Waterman score: 5593; 100.0% identity (100.0% similar) in 744 aa overlap (1-744:1-744)
10 20 30 40 50 60
pF1KB3 MAVLPGPLQLLGVLLTISLSSIRLIQAGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MAVLPGPLQLLGVLLTISLSSIRLIQAGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 MPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 GPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 IGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 IGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 GDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 GDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 IGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 IGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 DRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 DRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 PQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 PQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 PKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 PKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 HGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 HGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 YGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 YGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 YYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 YYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPS
670 680 690 700 710 720
730 740
pF1KB3 EQAAGLYAGQYVHSSFSGYLLYPM
::::::::::::::::::::::::
NP_065 EQAAGLYAGQYVHSSFSGYLLYPM
730 740
>>NP_001841 (OMIM: 120251) collagen alpha-1(VIII) chain (744 aa)
initn: 5593 init1: 5593 opt: 5593 Z-score: 1993.6 bits: 379.5 E(85289): 2.6e-104
Smith-Waterman score: 5593; 100.0% identity (100.0% similar) in 744 aa overlap (1-744:1-744)
10 20 30 40 50 60
pF1KB3 MAVLPGPLQLLGVLLTISLSSIRLIQAGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVLPGPLQLLGVLLTISLSSIRLIQAGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 MPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 IGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 GDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 IGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 DRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 PQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 PKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 HGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 YGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 YYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPS
670 680 690 700 710 720
730 740
pF1KB3 EQAAGLYAGQYVHSSFSGYLLYPM
::::::::::::::::::::::::
NP_001 EQAAGLYAGQYVHSSFSGYLLYPM
730 740
>>NP_005193 (OMIM: 120252,136800,609140) collagen alpha- (703 aa)
initn: 5240 init1: 2003 opt: 2644 Z-score: 957.5 bits: 187.7 E(85289): 1.4e-46
Smith-Waterman score: 2644; 57.2% identity (71.1% similar) in 671 aa overlap (88-743:42-702)
60 70 80 90 100 110
pF1KB3 VPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGK--EIPLA-
.:.. .: .: .: ::. :.::
NP_005 LLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGP-VGPPFREGKGQYLEMPLPL
20 30 40 50 60 70
120 130 140 150 160
pF1KB3 ---SLRGEQGPRGEPGPRGPPGPPGLPGH---GIPGIKGKPGPQGYPG---VGKPGMPGM
.:.:: :: :.:::::::::::.::. : ::..:.::: : :: .:: : ::.
NP_005 LPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGL
80 90 100 110 120 130
170 180 190 200 210 220
pF1KB3 PGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDR
::: : :.:: .:: : .:. : : ::: : ::: :. ::::. :.:: :: .:.
NP_005 PGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEP
140 150 160 170 180 190
230 240 250 260 270 280
pF1KB3 GPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGP
::.: ::: : :: :::.: :.:: ::. : : :::: : :.::::. :.:: :
NP_005 GPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGD
200 210 220 230 240 250
290 300 310 320 330 340
pF1KB3 LGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPP
:. : :: :::.: :. : .::::. :.: :: :.:: : :.::: :: :::
NP_005 KGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE---PGTRGPP
260 270 280 290 300
350 360 370 380 390 400
pF1KB3 GL--P-GIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMG
:: : : : ::.:::::::: .:::: :: ::: : : :: :: : : ::.:: :
NP_005 GLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAG
310 320 330 340 350 360
410 420 430 440 450 460
pF1KB3 PPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKG
:: : ::::::.: :: : :: .:. : .:. :::: :: : :: .: ::: ::::
NP_005 LPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKG
370 380 390 400 410 420
470 480 490 500 510 520
pF1KB3 EAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPG
: : : :: ::: : :: ::. :.::. ::.:: ::::. ::.::::: :.:: :::::
NP_005 EPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPG
430 440 450 460 470 480
530 540 550 560 570 580
pF1KB3 LPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQG
:::::: :.::.:: :::: ::. : : : ::::::::::: :... : :
NP_005 LPGPPGEGRAGEPGTAGPTGPPGVPGS--P-GITGPPGPPGPPGPPGAPGAFDETGIA-G
490 500 510 520 530 540
590 600 610 620 630 640
pF1KB3 EYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNG
.::. : :..:. .. . : . :. ::::: ::.::: : ::::.. ::::
NP_005 LHLPN-G-GVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNG
550 560 570 580 590 600
650 660 670 680 690 700
pF1KB3 RQNYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASG
...::: :::::: : :::::::::: :: ::::::.::: :. :::::::::.::::::
NP_005 HSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQASG
610 620 630 640 650 660
710 720 730 740
pF1KB3 SAVLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM
.::: :::.:.:..::::.:: :::. .:.::::::.:: :
NP_005 GAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT
670 680 690 700
>>XP_005270534 (OMIM: 120252,136800,609140) PREDICTED: c (780 aa)
initn: 5240 init1: 2003 opt: 2644 Z-score: 957.0 bits: 187.8 E(85289): 1.5e-46
Smith-Waterman score: 2644; 57.2% identity (71.1% similar) in 671 aa overlap (88-743:119-779)
60 70 80 90 100 110
pF1KB3 VPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGK--EIPLA-
.:.. .: .: .: ::. :.::
XP_005 LLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGP-VGPPFREGKGQYLEMPLPL
90 100 110 120 130 140
120 130 140 150 160
pF1KB3 ---SLRGEQGPRGEPGPRGPPGPPGLPGH---GIPGIKGKPGPQGYPG---VGKPGMPGM
.:.:: :: :.:::::::::::.::. : ::..:.::: : :: .:: : ::.
XP_005 LPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGL
150 160 170 180 190 200
170 180 190 200 210 220
pF1KB3 PGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDR
::: : :.:: .:: : .:. : : ::: : ::: :. ::::. :.:: :: .:.
XP_005 PGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEP
210 220 230 240 250 260
230 240 250 260 270 280
pF1KB3 GPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGP
::.: ::: : :: :::.: :.:: ::. : : :::: : :.::::. :.:: :
XP_005 GPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGD
270 280 290 300 310 320
290 300 310 320 330 340
pF1KB3 LGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPP
:. : :: :::.: :. : .::::. :.: :: :.:: : :.::: :: :::
XP_005 KGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE---PGTRGPP
330 340 350 360 370 380
350 360 370 380 390 400
pF1KB3 GL--P-GIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMG
:: : : : ::.:::::::: .:::: :: ::: : : :: :: : : ::.:: :
XP_005 GLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAG
390 400 410 420 430 440
410 420 430 440 450 460
pF1KB3 PPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKG
:: : ::::::.: :: : :: .:. : .:. :::: :: : :: .: ::: ::::
XP_005 LPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKG
450 460 470 480 490 500
470 480 490 500 510 520
pF1KB3 EAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPG
: : : :: ::: : :: ::. :.::. ::.:: ::::. ::.::::: :.:: :::::
XP_005 EPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPG
510 520 530 540 550 560
530 540 550 560 570 580
pF1KB3 LPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQG
:::::: :.::.:: :::: ::. : : : ::::::::::: :... : :
XP_005 LPGPPGEGRAGEPGTAGPTGPPGVPGS--P-GITGPPGPPGPPGPPGAPGAFDETGIA-G
570 580 590 600 610 620
590 600 610 620 630 640
pF1KB3 EYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNG
.::. : :..:. .. . : . :. ::::: ::.::: : ::::.. ::::
XP_005 LHLPN-G-GVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNG
630 640 650 660 670
650 660 670 680 690 700
pF1KB3 RQNYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASG
...::: :::::: : :::::::::: :: ::::::.::: :. :::::::::.::::::
XP_005 HSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQASG
680 690 700 710 720 730
710 720 730 740
pF1KB3 SAVLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM
.::: :::.:.:..::::.:: :::. .:.::::::.:: :
XP_005 GAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT
740 750 760 770 780
>>NP_001281276 (OMIM: 120252,136800,609140) collagen alp (638 aa)
initn: 5232 init1: 1995 opt: 2624 Z-score: 951.0 bits: 186.4 E(85289): 3.1e-46
Smith-Waterman score: 2624; 58.6% identity (72.1% similar) in 642 aa overlap (111-743:6-637)
90 100 110 120 130 140
pF1KB3 KEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGPPGPPGLPGH
.:. .:.:: :: :.:::::::::::.::.
NP_001 MPLPLLPM-DLKGEPGPPGKPGPRGPPGPPGFPGK
10 20 30
150 160 170 180 190
pF1KB3 ---GIPGIKGKPGPQGYPG---VGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPG
: ::..:.::: : :: .:: : ::.::: : :.:: .:: : .:. : : ::
NP_001 PGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPG
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB3 PQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVK
: : ::: :. ::::. :.:: :: .:. ::.: ::: : :: :::.: :.:: ::.
NP_001 PPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAP
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB3 GPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPG
: : :::: : :.::::. :.:: : :. : :: :::.: :. : .::::. :
NP_001 GQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDG
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB3 IGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGL--P-GIGKPGFPGPKGDRGMGGVPGAL
.: :: :.:: : :.::: :: ::::: : : : ::.:::::::: .:::: :
NP_001 VGVPGAAGLPGPQGPSGAKGE---PGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLL
220 230 240 250 260 270
380 390 400 410 420 430
pF1KB3 GPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEP
: ::: : : :: :: : : ::.:: : :: : ::::::.: :: : :: .:.
NP_001 GDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQ
280 290 300 310 320 330
440 450 460 470 480 490
pF1KB3 GLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQ
: .:. :::: :: : :: .: ::: ::::: : : :: ::: : :: ::. :.::.
NP_001 GPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQP
340 350 360 370 380 390
500 510 520 530 540 550
pF1KB3 GLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALG
::.:: ::::. ::.::::: :.:: ::::::::::: :.::.:: :::: ::. :
NP_001 GLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPG
400 410 420 430 440 450
560 570 580 590 600 610
pF1KB3 PQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGGP
: : ::::::::::: :... : : .::. : :..:. .. . : .
NP_001 ITG-P--PGPPGPPGPPGAPGAFDETGIA-GLHLPN-G-GVEGAVLGKGGKPQFGLGELS
460 470 480 490 500
620 630 640 650 660 670
pF1KB3 AYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVHCKG
:. ::::: ::.::: : ::::.. ::::...::: :::::: : :::::::::: ::
NP_001 AHATPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKG
510 520 530 540 550 560
680 690 700 710 720 730
pF1KB3 GNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPSEQAAGLYAGQY
::::::.::: :. :::::::::.::::::.::: :::.:.:..::::.:: :::. .:
NP_001 TNVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEY
570 580 590 600 610 620
740
pF1KB3 VHSSFSGYLLYPM
.::::::.:: :
NP_001 IHSSFSGFLLCPT
630
>>XP_016865738 (OMIM: 120110,156500) PREDICTED: collagen (680 aa)
initn: 1884 init1: 1884 opt: 1942 Z-score: 711.0 bits: 142.1 E(85289): 7.3e-33
Smith-Waterman score: 2509; 52.7% identity (67.7% similar) in 706 aa overlap (57-744:4-680)
30 40 50 60 70 80
pF1KB3 AGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPHMPLAKDGLAMGKEMPHLQYGKEYPHL
:.: . :.. .:. : . :...: ..
XP_016 MLPQIPFLLLVSLNLVHG-----VFYAERY-QM
10 20
90 100 110 120 130 140
pF1KB3 PQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGP---PGP---PGLPGH
: .: : . . .: : .: .::::: : ::: :: ::: :: ::.
XP_016 PTGIKGPLPNTKT-QFFIPYTIKSKGIA-VRGEQGTPGPPGPAGPRGHPGPSGPPGKPGY
30 40 50 60 70 80
150 160 170 180 190
pF1KB3 GIPGIKGKPGPQGYPG---VGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQG
: ::..:.:: : :: :::::.::.::: :: .: : ::..:: :.:::.:
XP_016 GSPGLQGEPGLPGPPGPSAVGKPGVPGLPGK------PGERGPYGPKGDVGPAGLPGPRG
90 100 110 120 130
200 210 220 230 240 250
pF1KB3 PPGPHGLPGI------GKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAP
:::: :.:: :::: : : :::.: : :: :: :. : ::. :.: :: :
XP_016 PPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRP
140 150 160 170 180 190
260 270 280 290 300 310
pF1KB3 GVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPG
: .: :: .:: :: : ::::: : .: :: : : : ::: :: :: :: :::::
XP_016 GERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGP---PGPQGPPG
200 210 220 230 240 250
320 330 340 350 360
pF1KB3 I--P-GIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVP
: :::::: : :::::.:: :: : ::. :::: ::.::::.:: ::.:: .:.:
XP_016 ERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLP
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB3 GALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPK
:. : .::.:: : :: : : :: : :: : ::. :.:::::: : .:: : :: :
XP_016 GGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAK
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB3 GEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIP
:: : : ::::. :. : : .: :: ::::. : : ::::: : : :: ::
XP_016 GERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHN
380 390 400 410 420 430
490 500 510 520 530 540
pF1KB3 GDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPG
:. : .: ::::: :: :: : ::.:: ::.:: ::::: ::. :. : :::: ::
XP_016 GEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPG
440 450 460 470 480 490
550 560 570 580 590 600
pF1KB3 ALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKN
: .:.:::::::::::::: :::: :. :... : :. :..: .
XP_016 PRGHSGEPGLPGPPGPPGPPGQ-AVMPEGFIKAGQR-PSLS-GTPLVS------ANQGVT
500 510 520 530 540
610 620 630 640 650 660
pF1KB3 GGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVH
: : . :::. :. .: .:.:. :.:.::: .:.:.:.::::::..::.:::.::::
XP_016 GMP---VSAFTVILSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVH
550 560 570 580 590 600
670 680 690 700 710 720
pF1KB3 CKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPSEQAAGLYA
:: .:::.:.::. ::::::::: ::.::::::::.. : .:.:.::.:. .. :::.
XP_016 VKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYS
610 620 630 640 650 660
730 740
pF1KB3 GQYVHSSFSGYLLYPM
..::::::::.:. ::
XP_016 SEYVHSSFSGFLVAPM
670 680
>>XP_011533735 (OMIM: 120110,156500) PREDICTED: collagen (680 aa)
initn: 1884 init1: 1884 opt: 1942 Z-score: 711.0 bits: 142.1 E(85289): 7.3e-33
Smith-Waterman score: 2509; 52.7% identity (67.7% similar) in 706 aa overlap (57-744:4-680)
30 40 50 60 70 80
pF1KB3 AGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPHMPLAKDGLAMGKEMPHLQYGKEYPHL
:.: . :.. .:. : . :...: ..
XP_011 MLPQIPFLLLVSLNLVHG-----VFYAERY-QM
10 20
90 100 110 120 130 140
pF1KB3 PQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGP---PGP---PGLPGH
: .: : . . .: : .: .::::: : ::: :: ::: :: ::.
XP_011 PTGIKGPLPNTKT-QFFIPYTIKSKGIA-VRGEQGTPGPPGPAGPRGHPGPSGPPGKPGY
30 40 50 60 70 80
150 160 170 180 190
pF1KB3 GIPGIKGKPGPQGYPG---VGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQG
: ::..:.:: : :: :::::.::.::: :: .: : ::..:: :.:::.:
XP_011 GSPGLQGEPGLPGPPGPSAVGKPGVPGLPGK------PGERGPYGPKGDVGPAGLPGPRG
90 100 110 120 130
200 210 220 230 240 250
pF1KB3 PPGPHGLPGI------GKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAP
:::: :.:: :::: : : :::.: : :: :: :. : ::. :.: :: :
XP_011 PPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRP
140 150 160 170 180 190
260 270 280 290 300 310
pF1KB3 GVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPG
: .: :: .:: :: : ::::: : .: :: : : : ::: :: :: :: :::::
XP_011 GERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGP---PGPQGPPG
200 210 220 230 240 250
320 330 340 350 360
pF1KB3 I--P-GIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVP
: :::::: : :::::.:: :: : ::. :::: ::.::::.:: ::.:: .:.:
XP_011 ERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLP
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB3 GALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPK
:. : .::.:: : :: : : :: : :: : ::. :.:::::: : .:: : :: :
XP_011 GGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAK
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB3 GEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIP
:: : : ::::. :. : : .: :: ::::. : : ::::: : : :: ::
XP_011 GERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHN
380 390 400 410 420 430
490 500 510 520 530 540
pF1KB3 GDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPG
:. : .: ::::: :: :: : ::.:: ::.:: ::::: ::. :. : :::: ::
XP_011 GEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPG
440 450 460 470 480 490
550 560 570 580 590 600
pF1KB3 ALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKN
: .:.:::::::::::::: :::: :. :... : :. :..: .
XP_011 PRGHSGEPGLPGPPGPPGPPGQ-AVMPEGFIKAGQR-PSLS-GTPLVS------ANQGVT
500 510 520 530 540
610 620 630 640 650 660
pF1KB3 GGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVH
: : . :::. :. .: .:.:. :.:.::: .:.:.:.::::::..::.:::.::::
XP_011 GMP---VSAFTVILSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVH
550 560 570 580 590 600
670 680 690 700 710 720
pF1KB3 CKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPSEQAAGLYA
:: .:::.:.::. ::::::::: ::.::::::::.. : .:.:.::.:. .. :::.
XP_011 VKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYS
610 620 630 640 650 660
730 740
pF1KB3 GQYVHSSFSGYLLYPM
..::::::::.:. ::
XP_011 SEYVHSSFSGFLVAPM
670 680
>>XP_016865737 (OMIM: 120110,156500) PREDICTED: collagen (680 aa)
initn: 1884 init1: 1884 opt: 1942 Z-score: 711.0 bits: 142.1 E(85289): 7.3e-33
Smith-Waterman score: 2509; 52.7% identity (67.7% similar) in 706 aa overlap (57-744:4-680)
30 40 50 60 70 80
pF1KB3 AGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPHMPLAKDGLAMGKEMPHLQYGKEYPHL
:.: . :.. .:. : . :...: ..
XP_016 MLPQIPFLLLVSLNLVHG-----VFYAERY-QM
10 20
90 100 110 120 130 140
pF1KB3 PQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGP---PGP---PGLPGH
: .: : . . .: : .: .::::: : ::: :: ::: :: ::.
XP_016 PTGIKGPLPNTKT-QFFIPYTIKSKGIA-VRGEQGTPGPPGPAGPRGHPGPSGPPGKPGY
30 40 50 60 70 80
150 160 170 180 190
pF1KB3 GIPGIKGKPGPQGYPG---VGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQG
: ::..:.:: : :: :::::.::.::: :: .: : ::..:: :.:::.:
XP_016 GSPGLQGEPGLPGPPGPSAVGKPGVPGLPGK------PGERGPYGPKGDVGPAGLPGPRG
90 100 110 120 130
200 210 220 230 240 250
pF1KB3 PPGPHGLPGI------GKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAP
:::: :.:: :::: : : :::.: : :: :: :. : ::. :.: :: :
XP_016 PPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRP
140 150 160 170 180 190
260 270 280 290 300 310
pF1KB3 GVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPG
: .: :: .:: :: : ::::: : .: :: : : : ::: :: :: :: :::::
XP_016 GERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGP---PGPQGPPG
200 210 220 230 240 250
320 330 340 350 360
pF1KB3 I--P-GIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVP
: :::::: : :::::.:: :: : ::. :::: ::.::::.:: ::.:: .:.:
XP_016 ERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLP
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB3 GALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPK
:. : .::.:: : :: : : :: : :: : ::. :.:::::: : .:: : :: :
XP_016 GGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAK
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB3 GEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIP
:: : : ::::. :. : : .: :: ::::. : : ::::: : : :: ::
XP_016 GERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHN
380 390 400 410 420 430
490 500 510 520 530 540
pF1KB3 GDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPG
:. : .: ::::: :: :: : ::.:: ::.:: ::::: ::. :. : :::: ::
XP_016 GEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPG
440 450 460 470 480 490
550 560 570 580 590 600
pF1KB3 ALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKN
: .:.:::::::::::::: :::: :. :... : :. :..: .
XP_016 PRGHSGEPGLPGPPGPPGPPGQ-AVMPEGFIKAGQR-PSLS-GTPLVS------ANQGVT
500 510 520 530 540
610 620 630 640 650 660
pF1KB3 GGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVH
: : . :::. :. .: .:.:. :.:.::: .:.:.:.::::::..::.:::.::::
XP_016 GMP---VSAFTVILSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVH
550 560 570 580 590 600
670 680 690 700 710 720
pF1KB3 CKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPSEQAAGLYA
:: .:::.:.::. ::::::::: ::.::::::::.. : .:.:.::.:. .. :::.
XP_016 VKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYS
610 620 630 640 650 660
730 740
pF1KB3 GQYVHSSFSGYLLYPM
..::::::::.:. ::
XP_016 SEYVHSSFSGFLVAPM
670 680
>>XP_006715396 (OMIM: 120110,156500) PREDICTED: collagen (680 aa)
initn: 1884 init1: 1884 opt: 1942 Z-score: 711.0 bits: 142.1 E(85289): 7.3e-33
Smith-Waterman score: 2509; 52.7% identity (67.7% similar) in 706 aa overlap (57-744:4-680)
30 40 50 60 70 80
pF1KB3 AGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPHMPLAKDGLAMGKEMPHLQYGKEYPHL
:.: . :.. .:. : . :...: ..
XP_006 MLPQIPFLLLVSLNLVHG-----VFYAERY-QM
10 20
90 100 110 120 130 140
pF1KB3 PQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGP---PGP---PGLPGH
: .: : . . .: : .: .::::: : ::: :: ::: :: ::.
XP_006 PTGIKGPLPNTKT-QFFIPYTIKSKGIA-VRGEQGTPGPPGPAGPRGHPGPSGPPGKPGY
30 40 50 60 70 80
150 160 170 180 190
pF1KB3 GIPGIKGKPGPQGYPG---VGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQG
: ::..:.:: : :: :::::.::.::: :: .: : ::..:: :.:::.:
XP_006 GSPGLQGEPGLPGPPGPSAVGKPGVPGLPGK------PGERGPYGPKGDVGPAGLPGPRG
90 100 110 120 130
200 210 220 230 240 250
pF1KB3 PPGPHGLPGI------GKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAP
:::: :.:: :::: : : :::.: : :: :: :. : ::. :.: :: :
XP_006 PPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRP
140 150 160 170 180 190
260 270 280 290 300 310
pF1KB3 GVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPG
: .: :: .:: :: : ::::: : .: :: : : : ::: :: :: :: :::::
XP_006 GERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGP---PGPQGPPG
200 210 220 230 240 250
320 330 340 350 360
pF1KB3 I--P-GIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVP
: :::::: : :::::.:: :: : ::. :::: ::.::::.:: ::.:: .:.:
XP_006 ERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLP
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB3 GALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPK
:. : .::.:: : :: : : :: : :: : ::. :.:::::: : .:: : :: :
XP_006 GGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAK
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB3 GEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIP
:: : : ::::. :. : : .: :: ::::. : : ::::: : : :: ::
XP_006 GERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHN
380 390 400 410 420 430
490 500 510 520 530 540
pF1KB3 GDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPG
:. : .: ::::: :: :: : ::.:: ::.:: ::::: ::. :. : :::: ::
XP_006 GEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPG
440 450 460 470 480 490
550 560 570 580 590 600
pF1KB3 ALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKN
: .:.:::::::::::::: :::: :. :... : :. :..: .
XP_006 PRGHSGEPGLPGPPGPPGPPGQ-AVMPEGFIKAGQR-PSLS-GTPLVS------ANQGVT
500 510 520 530 540
610 620 630 640 650 660
pF1KB3 GGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVH
: : . :::. :. .: .:.:. :.:.::: .:.:.:.::::::..::.:::.::::
XP_006 GMP---VSAFTVILSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVH
550 560 570 580 590 600
670 680 690 700 710 720
pF1KB3 CKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPSEQAAGLYA
:: .:::.:.::. ::::::::: ::.::::::::.. : .:.:.::.:. .. :::.
XP_006 VKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYS
610 620 630 640 650 660
730 740
pF1KB3 GQYVHSSFSGYLLYPM
..::::::::.:. ::
XP_006 SEYVHSSFSGFLVAPM
670 680
>>NP_000484 (OMIM: 120110,156500) collagen alpha-1(X) ch (680 aa)
initn: 1884 init1: 1884 opt: 1942 Z-score: 711.0 bits: 142.1 E(85289): 7.3e-33
Smith-Waterman score: 2509; 52.7% identity (67.7% similar) in 706 aa overlap (57-744:4-680)
30 40 50 60 70 80
pF1KB3 AGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPHMPLAKDGLAMGKEMPHLQYGKEYPHL
:.: . :.. .:. : . :...: ..
NP_000 MLPQIPFLLLVSLNLVHG-----VFYAERY-QM
10 20
90 100 110 120 130 140
pF1KB3 PQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGP---PGP---PGLPGH
: .: : . . .: : .: .::::: : ::: :: ::: :: ::.
NP_000 PTGIKGPLPNTKT-QFFIPYTIKSKGIA-VRGEQGTPGPPGPAGPRGHPGPSGPPGKPGY
30 40 50 60 70 80
150 160 170 180 190
pF1KB3 GIPGIKGKPGPQGYPG---VGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQG
: ::..:.:: : :: :::::.::.::: :: .: : ::..:: :.:::.:
NP_000 GSPGLQGEPGLPGPPGPSAVGKPGVPGLPGK------PGERGPYGPKGDVGPAGLPGPRG
90 100 110 120 130
200 210 220 230 240 250
pF1KB3 PPGPHGLPGI------GKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAP
:::: :.:: :::: : : :::.: : :: :: :. : ::. :.: :: :
NP_000 PPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRP
140 150 160 170 180 190
260 270 280 290 300 310
pF1KB3 GVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPG
: .: :: .:: :: : ::::: : .: :: : : : ::: :: :: :: :::::
NP_000 GERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGP---PGPQGPPG
200 210 220 230 240 250
320 330 340 350 360
pF1KB3 I--P-GIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVP
: :::::: : :::::.:: :: : ::. :::: ::.::::.:: ::.:: .:.:
NP_000 ERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLP
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB3 GALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPK
:. : .::.:: : :: : : :: : :: : ::. :.:::::: : .:: : :: :
NP_000 GGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAK
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB3 GEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIP
:: : : ::::. :. : : .: :: ::::. : : ::::: : : :: ::
NP_000 GERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHN
380 390 400 410 420 430
490 500 510 520 530 540
pF1KB3 GDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPG
:. : .: ::::: :: :: : ::.:: ::.:: ::::: ::. :. : :::: ::
NP_000 GEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPG
440 450 460 470 480 490
550 560 570 580 590 600
pF1KB3 ALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKN
: .:.:::::::::::::: :::: :. :... : :. :..: .
NP_000 PRGHSGEPGLPGPPGPPGPPGQ-AVMPEGFIKAGQR-PSLS-GTPLVS------ANQGVT
500 510 520 530 540
610 620 630 640 650 660
pF1KB3 GGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVH
: : . :::. :. .: .:.:. :.:.::: .:.:.:.::::::..::.:::.::::
NP_000 GMP---VSAFTVILSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVH
550 560 570 580 590 600
670 680 690 700 710 720
pF1KB3 CKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPSEQAAGLYA
:: .:::.:.::. ::::::::: ::.::::::::.. : .:.:.::.:. .. :::.
NP_000 VKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYS
610 620 630 640 650 660
730 740
pF1KB3 GQYVHSSFSGYLLYPM
..::::::::.:. ::
NP_000 SEYVHSSFSGFLVAPM
670 680
744 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:54:00 2016 done: Thu Nov 3 20:54:02 2016
Total Scan time: 15.300 Total Display time: 0.200
Function used was FASTA [36.3.4 Apr, 2011]