Result of FASTA (ccds) for
pF1KB3300
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3300, 723 aa
1>>>pF1KB3300 723 - 723 aa - 723 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.1906+/-0.00133; mu= 1.4774+/- 0.079
mean_var=472.9771+/-100.060, 0's: 0 Z-trim(112.1): 78 B-trim: 103 in 1/52
Lambda= 0.058973
statistics sampled from 12873 (12931) to 12873 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.397), width: 16
Scan time: 4.520
The best scores are: opt bits E(32554)
CCDS6873.1 LRSAM1 gene_id:90678|Hs108|chr9 ( 723) 4682 413.7 5e-115
CCDS55347.1 LRSAM1 gene_id:90678|Hs108|chr9 ( 696) 3074 276.8 7.5e-74
>>CCDS6873.1 LRSAM1 gene_id:90678|Hs108|chr9 (723 aa)
initn: 4682 init1: 4682 opt: 4682 Z-score: 2178.5 bits: 413.7 E(32554): 5e-115
Smith-Waterman score: 4682; 99.7% identity (100.0% similar) in 723 aa overlap (1-723:1-723)
10 20 30 40 50 60
pF1KB3 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 EEQSRLEQGLSEHQRHLDAERRRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
:::::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::
CCDS68 EEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
670 680 690 700 710 720
pF1KB3 HSS
:::
CCDS68 HSS
>>CCDS55347.1 LRSAM1 gene_id:90678|Hs108|chr9 (696 aa)
initn: 3036 init1: 3036 opt: 3074 Z-score: 1439.3 bits: 276.8 E(32554): 7.5e-74
Smith-Waterman score: 4465; 96.0% identity (96.3% similar) in 723 aa overlap (1-723:1-696)
10 20 30 40 50 60
pF1KB3 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 EEQSRLEQGLSEHQRHLDAERRRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
:::::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::
CCDS55 EEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQ------
430 440 450 460 470
490 500 510 520 530 540
pF1KB3 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
:::::::::::::::::::::::::::::::::::::::
CCDS55 ---------------------EMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
480 490 500 510
550 560 570 580 590 600
pF1KB3 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
520 530 540 550 560 570
610 620 630 640 650 660
pF1KB3 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
580 590 600 610 620 630
670 680 690 700 710 720
pF1KB3 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
640 650 660 670 680 690
pF1KB3 HSS
:::
CCDS55 HSS
723 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:54:43 2016 done: Thu Nov 3 20:54:44 2016
Total Scan time: 4.520 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]