FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3336, 551 aa
  1>>>pF1KB3336 551 - 551 aa - 551 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3950+/-0.000902; mu= 1.0074+/- 0.054
 mean_var=230.8130+/-47.829, 0's: 0 Z-trim(114.4): 18  B-trim: 146 in 1/51
 Lambda= 0.084420
 statistics sampled from 14961 (14972) to 14961 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.46), width:  16
 Scan time:  4.210

The best scores are:                                      opt bits E(32554)
CCDS13942.1 IL2RB gene_id:3560|Hs108|chr22         ( 551) 3866 483.7 2.5e-136


>>CCDS13942.1 IL2RB gene_id:3560|Hs108|chr22              (551 aa)
 initn: 3866 init1: 3866 opt: 3866  Z-score: 2561.0  bits: 483.7 E(32554): 2.5e-136
Smith-Waterman score: 3866; 100.0% identity (100.0% similar) in 551 aa overlap (1-551:1-551)

               10        20        30        40        50        60
pF1KB3 MAAPALSWRLPLLILLLPLATSWASAAVNGTSQFTCFYNSRANISCVWSQDGALQDTSCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAAPALSWRLPLLILLLPLATSWASAAVNGTSQFTCFYNSRANISCVWSQDGALQDTSCQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 VHAWPDRRRWNQTCELLPVSQASWACNLILGAPDSQKLTTVDIVTLRVLCREGVRWRVMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VHAWPDRRRWNQTCELLPVSQASWACNLILGAPDSQKLTTVDIVTLRVLCREGVRWRVMA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 APLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAALGKDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 APLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAALGKDT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 IPWLGHLLVGLSGAFGFIILVYLLINCRNTGPWLKKVLKCNTPDPSKFFSQLSSEHGGDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IPWLGHLLVGLSGAFGFIILVYLLINCRNTGPWLKKVLKCNTPDPSKFFSQLSSEHGGDV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 QKWLSSPFPSSSFSPGGLAPEISPLEVLERDKVTQLLLQQDKVPEPASLSSNHSLTSCFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QKWLSSPFPSSSFSPGGLAPEISPLEVLERDKVTQLLLQQDKVPEPASLSSNHSLTSCFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 NQGYFFFHLPDALEIEACQVYFTYDPYSEEDPDEGVAGAPTGSSPQPLQPLSGEDDAYCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NQGYFFFHLPDALEIEACQVYFTYDPYSEEDPDEGVAGAPTGSSPQPLQPLSGEDDAYCT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 FPSRDDLLLFSPSLLGGPSPPSTAPGGSGAGEERMPPSLQERVPRDWDPQPLGPPTPGVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FPSRDDLLLFSPSLLGGPSPPSTAPGGSGAGEERMPPSLQERVPRDWDPQPLGPPTPGVP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 DLVDFQPPPELVLREAGEEVPDAGPREGVSFPWSRPPGQGEFRALNARLPLNTDAYLSLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLVDFQPPPELVLREAGEEVPDAGPREGVSFPWSRPPGQGEFRALNARLPLNTDAYLSLQ
              490       500       510       520       530       540

              550 
pF1KB3 ELQGQDPTHLV
       :::::::::::
CCDS13 ELQGQDPTHLV
              550 




551 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:13:32 2016 done: Fri Nov  4 02:13:33 2016
 Total Scan time:  4.210 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]