FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3343, 897 aa
  1>>>pF1KB3343 897 - 897 aa - 897 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.5073+/-0.00108; mu= -4.1199+/- 0.065
 mean_var=472.1140+/-98.442, 0's: 0 Z-trim(115.9): 60  B-trim: 165 in 1/54
 Lambda= 0.059027
 statistics sampled from 16403 (16457) to 16403 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.506), width:  16
 Scan time:  4.170

The best scores are:                                      opt bits E(32554)
CCDS13936.1 CSF2RB gene_id:1439|Hs108|chr22        ( 897) 6304 552.0 1.8e-156


>>CCDS13936.1 CSF2RB gene_id:1439|Hs108|chr22             (897 aa)
 initn: 6304 init1: 6304 opt: 6304  Z-score: 2922.5  bits: 552.0 E(32554): 1.8e-156
Smith-Waterman score: 6304; 100.0% identity (100.0% similar) in 897 aa overlap (1-897:1-897)

               10        20        30        40        50        60
pF1KB3 MVLAQGLLSMALLALCWERSLAGAEETIPLQTLRCYNDYTSHITCRWADTQDAQRLVNVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVLAQGLLSMALLALCWERSLAGAEETIPLQTLRCYNDYTSHITCRWADTQDAQRLVNVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 TRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 DEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGEEECSPVLREGLGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGEEECSPVLREGLGSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 HTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLNVTKDGDSYSLRWET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLNVTKDGDSYSLRWET
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 MKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 YNGIWSEWSEARSWDTESVLPMWVLALIVIFLTIAVLLALRFCGIYGYRLRRKWEEKIPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YNGIWSEWSEARSWDTESVLPMWVLALIVIFLTIAVLLALRFCGIYGYRLRRKWEEKIPN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 PSKSHLFQNGSAELWPPGSMSAFTSGSPPHQGPWGSRFPELEGVFPVGFGDSEVSPLTIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PSKSHLFQNGSAELWPPGSMSAFTSGSPPHQGPWGSRFPELEGVFPVGFGDSEVSPLTIE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 DPKHVCDPPSGPDTTPAASDLPTEQPPSPQPGPPAASHTPEKQASSFDFNGPYLGPPHSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DPKHVCDPPSGPDTTPAASDLPTEQPPSPQPGPPAASHTPEKQASSFDFNGPYLGPPHSR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SLPDILGQPEPPQEGGSQKSPPPGSLEYLCLPAGGQVQLVPLAQAMGPGQAVEVERRPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SLPDILGQPEPPQEGGSQKSPPPGSLEYLCLPAGGQVQLVPLAQAMGPGQAVEVERRPSQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 GAAGSPSLESGGGPAPPALGPRVGGQDQKDSPVAIPMSSGDTEDPGVASGYVSSADLVFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GAAGSPSLESGGGPAPPALGPRVGGQDQKDSPVAIPMSSGDTEDPGVASGYVSSADLVFT
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 PNSGASSVSLVPSLGLPSDQTPSLCPGLASGPPGAPGPVKSGFEGYVELPPIEGRSPRSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PNSGASSVSLVPSLGLPSDQTPSLCPGLASGPPGAPGPVKSGFEGYVELPPIEGRSPRSP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 RNNPVPPEAKSPVLNPGERPADVSPTSPQPEGLLVLQQVGDYCFLPGLGPGPLSLRSKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RNNPVPPEAKSPVLNPGERPADVSPTSPQPEGLLVLQQVGDYCFLPGLGPGPLSLRSKPS
              790       800       810       820       830       840

              850       860       870       880       890       
pF1KB3 SPGPGPEIKNLDQAFQVKKPPGQAVPQVPVIQLFKALKQQDYLSLPPWEVNKPGEVC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPGPGPEIKNLDQAFQVKKPPGQAVPQVPVIQLFKALKQQDYLSLPPWEVNKPGEVC
              850       860       870       880       890       




897 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:57:58 2016 done: Thu Nov  3 12:57:58 2016
 Total Scan time:  4.170 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]