FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3387, 90 aa
  1>>>pF1KB3387 90 - 90 aa - 90 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3912+/-0.000684; mu= 3.6143+/- 0.042
 mean_var=184.0158+/-36.221, 0's: 0 Z-trim(117.9): 7  B-trim: 1042 in 1/54
 Lambda= 0.094547
 statistics sampled from 18727 (18734) to 18727 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.855), E-opt: 0.2 (0.575), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS283.1 HMGN2 gene_id:3151|Hs108|chr1            (  90)  607 92.4 4.1e-20
CCDS4615.1 HMGN4 gene_id:10473|Hs108|chr6          (  90)  534 82.4 4.1e-17


>>CCDS283.1 HMGN2 gene_id:3151|Hs108|chr1                 (90 aa)
 initn: 607 init1: 607 opt: 607  Z-score: 474.6  bits: 92.4 E(32554): 4.1e-20
Smith-Waterman score: 607; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90)

               10        20        30        40        50        60
pF1KB3 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA
               10        20        30        40        50        60

               70        80        90
pF1KB3 DAGKEGNNPAENGDAKTDQAQKAEGAGDAK
       ::::::::::::::::::::::::::::::
CCDS28 DAGKEGNNPAENGDAKTDQAQKAEGAGDAK
               70        80        90

>>CCDS4615.1 HMGN4 gene_id:10473|Hs108|chr6               (90 aa)
 initn: 534 init1: 534 opt: 534  Z-score: 420.8  bits: 82.4 E(32554): 4.1e-17
Smith-Waterman score: 534; 86.7% identity (96.7% similar) in 90 aa overlap (1-90:1-90)

               10        20        30        40        50        60
pF1KB3 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA
       ::::::.::::::::::::::::::::::::::::::::.:::: ::::::.:::.::::
CCDS46 MPKRKAKGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPRPKKASAKKGEKLPKGRKGKA
               10        20        30        40        50        60

               70        80        90
pF1KB3 DAGKEGNNPAENGDAKTDQAQKAEGAGDAK
       ::::.:::::.: ::.: :.:::::.::::
CCDS46 DAGKDGNNPAKNRDASTLQSQKAEGTGDAK
               70        80        90




90 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:16:12 2016 done: Fri Nov  4 02:16:12 2016
 Total Scan time:  1.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]