Result of FASTA (omim) for
pF1KB3387
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3387, 90 aa
1>>>pF1KB3387 90 - 90 aa - 90 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9091+/-0.000265; mu= -0.1919+/- 0.017
mean_var=177.4381+/-34.512, 0's: 0 Z-trim(125.7): 14 B-trim: 41 in 1/58
Lambda= 0.096283
statistics sampled from 49910 (49924) to 49910 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.863), E-opt: 0.2 (0.585), width: 16
Scan time: 3.870
The best scores are: opt bits E(85289)
NP_005508 (OMIM: 163910) non-histone chromosomal p ( 90) 607 94.0 3.5e-20
NP_004233 (OMIM: 604502) high mobility group nucle ( 99) 335 56.2 8.9e-09
NP_001188291 (OMIM: 604502) high mobility group nu ( 95) 310 52.8 9.6e-08
NP_001305813 (OMIM: 604502) high mobility group nu ( 124) 310 52.8 1.2e-07
NP_001305815 (OMIM: 604502) high mobility group nu ( 128) 310 52.9 1.2e-07
NP_001188292 (OMIM: 604502) high mobility group nu ( 130) 310 52.9 1.2e-07
NP_001305816 (OMIM: 604502) high mobility group nu ( 130) 310 52.9 1.2e-07
NP_001305814 (OMIM: 604502) high mobility group nu ( 82) 290 49.9 5.9e-07
NP_620058 (OMIM: 604502) high mobility group nucle ( 77) 267 46.7 5.1e-06
NP_001305817 (OMIM: 604502) high mobility group nu ( 61) 215 39.4 0.00064
>>NP_005508 (OMIM: 163910) non-histone chromosomal prote (90 aa)
initn: 607 init1: 607 opt: 607 Z-score: 483.3 bits: 94.0 E(85289): 3.5e-20
Smith-Waterman score: 607; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90)
10 20 30 40 50 60
pF1KB3 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA
10 20 30 40 50 60
70 80 90
pF1KB3 DAGKEGNNPAENGDAKTDQAQKAEGAGDAK
::::::::::::::::::::::::::::::
NP_005 DAGKEGNNPAENGDAKTDQAQKAEGAGDAK
70 80 90
>>NP_004233 (OMIM: 604502) high mobility group nucleosom (99 aa)
initn: 415 init1: 180 opt: 335 Z-score: 278.5 bits: 56.2 E(85289): 8.9e-09
Smith-Waterman score: 335; 57.3% identity (80.2% similar) in 96 aa overlap (1-88:1-96)
10 20 30 40 50
pF1KB3 MPKRKAEGDAKG-DKAKV-KDEPQRRSARLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK
:::::. ...: : .:: :.:: :::::::::::::::::::.:. ::: : :. .:
NP_004 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA
10 20 30 40 50 60
60 70 80 90
pF1KB3 KGKAD----AGKEGNNPAENGDAKTDQAQKAEGAGDAK
::: . :::::. :.:::..:...:::.:.. .
NP_004 KGKKEEKQEAGKEGTAPSENGETKAEEAQKTESVDNEGE
70 80 90
>>NP_001188291 (OMIM: 604502) high mobility group nucleo (95 aa)
initn: 224 init1: 184 opt: 310 Z-score: 260.0 bits: 52.8 E(85289): 9.6e-08
Smith-Waterman score: 310; 58.6% identity (79.3% similar) in 87 aa overlap (1-79:1-87)
10 20 30 40 50
pF1KB3 MPKRKAEGDAKG-DKAKV-KDEPQRRSARLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK
:::::. ...: : .:: :.:: :::::::::::::::::::.:. ::: : :. .:
NP_001 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA
10 20 30 40 50 60
60 70 80 90
pF1KB3 KGKAD----AGKEGNNPAENGDAKTDQAQKAEGAGDAK
::: . :::::. :.:::..:...
NP_001 KGKKEEKQEAGKEGTAPSENGETKAEEVLSINTSH
70 80 90
>>NP_001305813 (OMIM: 604502) high mobility group nucleo (124 aa)
initn: 224 init1: 184 opt: 310 Z-score: 258.4 bits: 52.8 E(85289): 1.2e-07
Smith-Waterman score: 310; 58.6% identity (79.3% similar) in 87 aa overlap (1-79:1-87)
10 20 30 40 50
pF1KB3 MPKRKAEGDAKG-DKAKV-KDEPQRRSARLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK
:::::. ...: : .:: :.:: :::::::::::::::::::.:. ::: : :. .:
NP_001 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA
10 20 30 40 50 60
60 70 80 90
pF1KB3 KGKAD----AGKEGNNPAENGDAKTDQAQKAEGAGDAK
::: . :::::. :.:::..:...
NP_001 KGKKEEKQEAGKEGTAPSENGETKAEEIHISRSTVNVSTSRGTPPSTLSVKGQIETVRVK
70 80 90 100 110 120
>>NP_001305815 (OMIM: 604502) high mobility group nucleo (128 aa)
initn: 224 init1: 184 opt: 310 Z-score: 258.2 bits: 52.9 E(85289): 1.2e-07
Smith-Waterman score: 310; 58.6% identity (79.3% similar) in 87 aa overlap (1-79:1-87)
10 20 30 40 50
pF1KB3 MPKRKAEGDAKG-DKAKV-KDEPQRRSARLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK
:::::. ...: : .:: :.:: :::::::::::::::::::.:. ::: : :. .:
NP_001 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA
10 20 30 40 50 60
60 70 80 90
pF1KB3 KGKAD----AGKEGNNPAENGDAKTDQAQKAEGAGDAK
::: . :::::. :.:::..:...
NP_001 KGKKEEKQEAGKEGTAPSENGETKAEEIHISRSTVNVSTSRGTPPSTLSVKGQIETAQKT
70 80 90 100 110 120
>>NP_001188292 (OMIM: 604502) high mobility group nucleo (130 aa)
initn: 224 init1: 184 opt: 310 Z-score: 258.1 bits: 52.9 E(85289): 1.2e-07
Smith-Waterman score: 310; 58.6% identity (79.3% similar) in 87 aa overlap (1-79:1-87)
10 20 30 40 50
pF1KB3 MPKRKAEGDAKG-DKAKV-KDEPQRRSARLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK
:::::. ...: : .:: :.:: :::::::::::::::::::.:. ::: : :. .:
NP_001 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA
10 20 30 40 50 60
60 70 80 90
pF1KB3 KGKAD----AGKEGNNPAENGDAKTDQAQKAEGAGDAK
::: . :::::. :.:::..:...
NP_001 KGKKEEKQEAGKEGTAPSENGETKAEEIHISRSTVNVSTSRGTPPSTLSVKGQIETVRAQ
70 80 90 100 110 120
>>NP_001305816 (OMIM: 604502) high mobility group nucleo (130 aa)
initn: 224 init1: 184 opt: 310 Z-score: 258.1 bits: 52.9 E(85289): 1.2e-07
Smith-Waterman score: 310; 58.6% identity (79.3% similar) in 87 aa overlap (1-79:1-87)
10 20 30 40 50
pF1KB3 MPKRKAEGDAKG-DKAKV-KDEPQRRSARLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK
:::::. ...: : .:: :.:: :::::::::::::::::::.:. ::: : :. .:
NP_001 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA
10 20 30 40 50 60
60 70 80 90
pF1KB3 KGKAD----AGKEGNNPAENGDAKTDQAQKAEGAGDAK
::: . :::::. :.:::..:...
NP_001 KGKKEEKQEAGKEGTAPSENGETKAEEIHISRSTVNVSTSRGTPPSTLSVKGQIETVRVK
70 80 90 100 110 120
>>NP_001305814 (OMIM: 604502) high mobility group nucleo (82 aa)
initn: 368 init1: 165 opt: 290 Z-score: 245.9 bits: 49.9 E(85289): 5.9e-07
Smith-Waterman score: 290; 58.4% identity (80.5% similar) in 77 aa overlap (18-88:3-79)
10 20 30 40 50
pF1KB3 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKK--GEKVPKGKKG
: .: :::::::::::::::::::.:. ::: : :. .: ::
NP_001 MPKRKPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGAKG
10 20 30 40
60 70 80 90
pF1KB3 KAD----AGKEGNNPAENGDAKTDQAQKAEGAGDAK
: . :::::. :.:::..:...:::.:.. .
NP_001 KKEEKQEAGKEGTAPSENGETKAEEAQKTESVDNEGE
50 60 70 80
>>NP_620058 (OMIM: 604502) high mobility group nucleosom (77 aa)
initn: 206 init1: 181 opt: 267 Z-score: 229.0 bits: 46.7 E(85289): 5.1e-06
Smith-Waterman score: 267; 62.2% identity (77.0% similar) in 74 aa overlap (1-66:1-74)
10 20 30 40 50
pF1KB3 MPKRKAEGDAKG-DKAKV-KDEPQRRSARLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK
:::::. ...: : .:: :.:: :::::::::::::::::::.:. ::: : :. .:
NP_620 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA
10 20 30 40 50 60
60 70 80 90
pF1KB3 KGKAD----AGKEGNNPAENGDAKTDQAQKAEGAGDAK
::: . :::::
NP_620 KGKKEEKQEAGKEGTEN
70
>>NP_001305817 (OMIM: 604502) high mobility group nucleo (61 aa)
initn: 225 init1: 175 opt: 215 Z-score: 191.3 bits: 39.4 E(85289): 0.00064
Smith-Waterman score: 215; 66.1% identity (82.1% similar) in 56 aa overlap (1-52:1-56)
10 20 30 40 50
pF1KB3 MPKRKAEGDAKG-DKAKV-KDEPQRRSARLSAKPAPPKPEPKPKK--APAKKGEKVPKGK
:::::. ...: : .:: :.:: :::::::::::::::::::.: : :.: :.:
NP_001 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKAQKTESVDNEG
10 20 30 40 50 60
60 70 80 90
pF1KB3 KGKADAGKEGNNPAENGDAKTDQAQKAEGAGDAK
NP_001 E
90 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:16:13 2016 done: Fri Nov 4 02:16:13 2016
Total Scan time: 3.870 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]