FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3391, 288 aa
  1>>>pF1KB3391 288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6080+/-0.0009; mu= 15.3266+/- 0.054
 mean_var=88.7449+/-16.966, 0's: 0 Z-trim(107.3): 17  B-trim: 0 in 0/51
 Lambda= 0.136145
 statistics sampled from 9479 (9482) to 9479 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.291), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS9162.1 RPL6 gene_id:6128|Hs108|chr12           ( 288) 1863 375.6 2.3e-104


>>CCDS9162.1 RPL6 gene_id:6128|Hs108|chr12                (288 aa)
 initn: 1863 init1: 1863 opt: 1863  Z-score: 1987.2  bits: 375.6 E(32554): 2.3e-104
Smith-Waterman score: 1863; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KB3 MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 AMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTED
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKY
              190       200       210       220       230       240

              250       260       270       280        
pF1KB3 EITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 EITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF
              250       260       270       280        




288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:17:09 2016 done: Fri Nov  4 02:17:09 2016
 Total Scan time:  1.980 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]