FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3393, 308 aa
  1>>>pF1KB3393 308 - 308 aa - 308 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0108+/-0.000897; mu= 16.9776+/- 0.054
 mean_var=56.6352+/-11.817, 0's: 0 Z-trim(105.1): 19  B-trim: 11 in 1/46
 Lambda= 0.170424
 statistics sampled from 8232 (8239) to 8232 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.253), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS12313.1 TECR gene_id:9524|Hs108|chr19          ( 308) 2140 534.3 4.5e-152
CCDS33990.1 TECRL gene_id:253017|Hs108|chr4        ( 363) 1168 295.3 4.6e-80
CCDS74503.1 SRD5A2 gene_id:6716|Hs108|chr2         ( 254)  230 64.6   9e-11


>>CCDS12313.1 TECR gene_id:9524|Hs108|chr19               (308 aa)
 initn: 2140 init1: 2140 opt: 2140  Z-score: 2843.6  bits: 534.3 E(32554): 4.5e-152
Smith-Waterman score: 2140; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB3 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 SSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLR
              250       260       270       280       290       300

               
pF1KB3 MPIIPFLL
       ::::::::
CCDS12 MPIIPFLL
               

>>CCDS33990.1 TECRL gene_id:253017|Hs108|chr4             (363 aa)
 initn: 1153 init1: 830 opt: 1168  Z-score: 1550.9  bits: 295.3 E(32554): 4.6e-80
Smith-Waterman score: 1168; 51.6% identity (78.8% similar) in 306 aa overlap (3-308:59-363)

                                           10        20        30  
pF1KB3                             MKHYEVEILDAKTREKLCFLDKVEPHATIAEI
                                     :.:.::.::.::...:.::::   .:: ..
CCDS33 DMRNFHFLSKLVLSAGPLRPTPAVKHSKTTHFEIEIFDAQTRKQICILDKVTQSSTIHDV
       30        40        50        60        70        80        

             40        50        60        70        80        90  
pF1KB3 KNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLGAQISWVTVFL
       :. : :. :.:::.: .:.:.  :  :::  ..:.. ... .:::  ::: :.::.::::
CCDS33 KQKFHKACPKWYPSRVGLQLECGGPFLKDYITIQSIAASSIVTLYATDLGQQVSWTTVFL
       90       100       110       120       130       140        

            100       110       120       130       140       150  
pF1KB3 TEYAGPLFIYLLFYFRVPFIYGHKYDFTSSRHTVVHLACICHSFHYIKRLLETLFVHRFS
       .::.:::.::::::.:.: ::  : .    :: ::::::.:: .:::. ::::::::. :
CCDS33 AEYTGPLLIYLLFYLRIPCIYDGKESARRLRHPVVHLACFCHCIHYIRYLLETLFVHKVS
      150       160       170       180       190       200        

            160       170       180       190       200       210  
pF1KB3 HGTMPLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIH
        :  ::.:.. .:..::::..:.::::::::::::..: .:. ..   :.::. ::  :.
CCDS33 AGHTPLKNLIMSCAFYWGFTSWIAYYINHPLYTPPSFGNRQITVSAINFLICEAGNHFIN
      210       220       230       240       250       260        

            220       230       240       250       260       270  
pF1KB3 MALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSL
       . :     .:...  .: :. :::::.:.::::::::::.::::.:..::: :::..:.:
CCDS33 VMLSHPNHTGNNA-CFPSPNYNPFTWMFFLVSCPNYTYEIGSWISFTVMTQTLPVGIFTL
      270       280        290       300       310       320       

            280       290       300        
pF1KB3 VGFTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFLL
       .   ::..::. ::. ::..: .:   .  .:::.:
CCDS33 LMSIQMSLWAQKKHKIYLRKFNSYIHRKSAMIPFIL
       330       340       350       360   

>>CCDS74503.1 SRD5A2 gene_id:6716|Hs108|chr2              (254 aa)
 initn: 209 init1: 178 opt: 230  Z-score: 306.9  bits: 64.6 E(32554): 9e-11
Smith-Waterman score: 234; 28.3% identity (58.2% similar) in 184 aa overlap (127-308:82-254)

        100       110       120       130       140       150      
pF1KB3 GPLFIYLLFYFRVPFIYGHKYDFTSSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTM
                                     : :. .:  .::..: .   ...:     .
CCDS74 AWFLQELPSFAVPAGILARQPLSLFGPPGTVLLGLFC--LHYFHRTFVYSLLNR--GRPY
              60        70        80          90       100         

        160       170       180       190       200       210      
pF1KB3 PLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIH--MA
       :   :... ..  : .. ..::. .    :  . .. ....:..:..    ...::  . 
CCDS74 PAILILRGTAFCTGNGVLQGYYLIYCAEYPDGWYTD-IRFSLGVFLFILGMGINIHSDYI
       110       120       130       140        150       160      

          220       230       240       250       260       270    
pF1KB3 LRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVG
       ::.::  :  . .::         ::  ::  :.  :.  :::.:. :  ::.  :.. .
CCDS74 LRQLRKPGEISYRIPQGG------LFTYVSGANFLGEIIEWIGYALATWSLPALAFAFFS
        170       180             190       200       210       220

          280       290       300        
pF1KB3 FTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFLL
       .  . . :  .:: ::: :.:::  :  .:::..
CCDS74 LCFLGLRAFHHHRFYLKMFEDYPKSRKALIPFIF
              230       240       250    




308 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:57:24 2016 done: Sat Nov  5 04:57:24 2016
 Total Scan time:  2.000 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]