FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3398, 151 aa
  1>>>pF1KB3398 151 - 151 aa - 151 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8414+/-0.000725; mu= 14.1072+/- 0.044
 mean_var=58.9660+/-11.718, 0's: 0 Z-trim(108.7): 18  B-trim: 149 in 1/49
 Lambda= 0.167022
 statistics sampled from 10342 (10354) to 10342 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.318), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS7823.1 RPS13 gene_id:6207|Hs108|chr11          ( 151)  978 243.4 4.1e-65


>>CCDS7823.1 RPS13 gene_id:6207|Hs108|chr11               (151 aa)
 initn: 978 init1: 978 opt: 978  Z-score: 1282.5  bits: 243.4 E(32554): 4.1e-65
Smith-Waterman score: 978; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KB3 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
               70        80        90       100       110       120

              130       140       150 
pF1KB3 RIHRLARYYKTKRVLPPNWKYESSTASALVA
       :::::::::::::::::::::::::::::::
CCDS78 RIHRLARYYKTKRVLPPNWKYESSTASALVA
              130       140       150 




151 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:58:02 2016 done: Sat Nov  5 04:58:02 2016
 Total Scan time:  1.810 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]