FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3406, 367 aa
  1>>>pF1KB3406 367 - 367 aa - 367 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0980+/-0.000832; mu= 12.9663+/- 0.050
 mean_var=78.1007+/-15.590, 0's: 0 Z-trim(107.9): 17  B-trim: 0 in 0/49
 Lambda= 0.145127
 statistics sampled from 9825 (9839) to 9825 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.302), width:  16
 Scan time:  2.850

The best scores are:                                      opt bits E(32554)
CCDS13897.1 DRG1 gene_id:4733|Hs108|chr22          ( 367) 2399 511.6 4.2e-145
CCDS11191.1 DRG2 gene_id:1819|Hs108|chr17          ( 364) 1351 292.2 4.7e-79
CCDS82082.1 DRG2 gene_id:1819|Hs108|chr17          ( 343) 1187 257.9 9.8e-69


>>CCDS13897.1 DRG1 gene_id:4733|Hs108|chr22               (367 aa)
 initn: 2399 init1: 2399 opt: 2399  Z-score: 2718.5  bits: 511.6 E(32554): 4.2e-145
Smith-Waterman score: 2399; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)

               10        20        30        40        50        60
pF1KB3 MSSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 KTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 FKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 IPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED
              310       320       330       340       350       360

              
pF1KB3 VIQIVKK
       :::::::
CCDS13 VIQIVKK
              

>>CCDS11191.1 DRG2 gene_id:1819|Hs108|chr17               (364 aa)
 initn: 1375 init1: 974 opt: 1351  Z-score: 1532.7  bits: 292.2 E(32554): 4.7e-79
Smith-Waterman score: 1351; 57.6% identity (81.5% similar) in 363 aa overlap (5-367:4-364)

               10        20        30        40        50        60
pF1KB3 MSSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVA
           : ::.::: :.::::::::: .:::::::.::: : .:. :. ....  :::::: 
CCDS11  MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASS-KGEGFDVM
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB3 KTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG
       :.::::....:::::::::.:: .... ::.:.::::::: .::::.::::.::::::::
CCDS11 KSGDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPG
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KB3 IIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIG
       ::::: .:::::::::::::: ..:...::. :   .....:.:::. :::::.. ::: 
CCDS11 IIEGAAQGKGRGRQVIAVARTADVIIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIY
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KB3 FKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVY
       :: :  :::....:   .. . . :. :: :::: ::.: .: : . :..:::. :::::
CCDS11 FKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVY
      180       190       200       210       220       230        

              250       260       270       280       290       300
pF1KB3 IPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG
       .::.:: :::::::.::.: . . :. : ::   . :.: ::: .:.:: :. :::: .:
CCDS11 MPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRG
      240       250       260       270       280       290        

              310       320       330       340       350       360
pF1KB3 QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED
       : ::.:. ..:  . ..::  : .::..: ..:::::::: :.:..::.::  ::.: ::
CCDS11 QRPDFTDAIIL-RKGASVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHED
      300        310       320       330       340       350       

              
pF1KB3 VIQIVKK
       :::::::
CCDS11 VIQIVKK
       360    

>>CCDS82082.1 DRG2 gene_id:1819|Hs108|chr17               (343 aa)
 initn: 1211 init1: 974 opt: 1187  Z-score: 1347.5  bits: 257.9 E(32554): 9.8e-69
Smith-Waterman score: 1187; 56.1% identity (80.9% similar) in 330 aa overlap (5-334:4-331)

               10        20        30        40        50        60
pF1KB3 MSSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVA
           : ::.::: :.::::::::: .:::::::.::: : .:. :. ....  :::::: 
CCDS82  MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASS-KGEGFDVM
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB3 KTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG
       :.::::....:::::::::.:: .... ::.:.::::::: .::::.::::.::::::::
CCDS82 KSGDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPG
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KB3 IIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIG
       ::::: .:::::::::::::: ..:...::. :   .....:.:::. :::::.. ::: 
CCDS82 IIEGAAQGKGRGRQVIAVARTADVIIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIY
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KB3 FKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVY
       :: :  :::....:   .. . . :. :: :::: ::.: .: : . :..:::. :::::
CCDS82 FKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVY
      180       190       200       210       220       230        

              250       260       270       280       290       300
pF1KB3 IPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG
       .::.:: :::::::.::.: . . :. : ::   . :.: ::: .:.:: :. :::: .:
CCDS82 MPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRG
      240       250       260       270       280       290        

              310       320       330       340       350       360
pF1KB3 QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED
       : ::.:. ..:  . ..::  : .::..: ..::                          
CCDS82 QRPDFTDAIIL-RKGASVEHVCHRIHRSLASQFKAPAPSTVRSGWA              
      300        310       320       330       340                 

              
pF1KB3 VIQIVKK




367 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:20:22 2016 done: Fri Nov  4 02:20:22 2016
 Total Scan time:  2.850 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]