Result of FASTA (ccds) for
pF1KB3413
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3413, 339 aa
1>>>pF1KB3413 339 - 339 aa - 339 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1023+/-0.00107; mu= 6.2836+/- 0.062
mean_var=136.3043+/-29.255, 0's: 0 Z-trim(108.3): 151 B-trim: 396 in 1/49
Lambda= 0.109855
statistics sampled from 9941 (10137) to 9941 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.311), width: 16
Scan time: 2.680
The best scores are: opt bits E(32554)
CCDS2019.1 CIAO1 gene_id:9391|Hs108|chr2 ( 339) 2444 399.1 2.7e-111
CCDS46961.1 TBL1XR1 gene_id:79718|Hs108|chr3 ( 514) 398 75.0 1.5e-13
CCDS14779.1 TBL1Y gene_id:90665|Hs108|chrY ( 522) 373 71.0 2.4e-12
CCDS48078.1 TBL1X gene_id:6907|Hs108|chrX ( 526) 369 70.4 3.7e-12
CCDS14133.1 TBL1X gene_id:6907|Hs108|chrX ( 577) 369 70.4 4e-12
CCDS32528.1 PAFAH1B1 gene_id:5048|Hs108|chr17 ( 410) 342 66.0 6e-11
>>CCDS2019.1 CIAO1 gene_id:9391|Hs108|chr2 (339 aa)
initn: 2444 init1: 2444 opt: 2444 Z-score: 2111.6 bits: 399.1 E(32554): 2.7e-111
Smith-Waterman score: 2444; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ
250 260 270 280 290 300
310 320 330
pF1KB3 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL
:::::::::::::::::::::::::::::::::::::::
CCDS20 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL
310 320 330
>>CCDS46961.1 TBL1XR1 gene_id:79718|Hs108|chr3 (514 aa)
initn: 276 init1: 156 opt: 398 Z-score: 356.6 bits: 75.0 E(32554): 1.5e-13
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
CCDS46 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
200 210 220 230 240
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. ::.. ::. : :: :: :.:
CCDS46 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
250 260 270 280 290 300
100 110 120
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : :.:::::
CCDS46 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
310 320 330 340 350 360
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
.:: : .. .: . ... :: :..:.... . : :. .:::::.:.
CCDS46 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
370 380 390 400 410 420
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. . : .: :: :. :.:.::.:.:. ::: : :. :.::
CCDS46 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
430 440 450 460 470 480
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
CCDS46 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
490 500 510
>>CCDS14779.1 TBL1Y gene_id:90665|Hs108|chrY (522 aa)
initn: 348 init1: 146 opt: 373 Z-score: 335.1 bits: 71.0 E(32554): 2.4e-12
Smith-Waterman score: 401; 34.0% identity (53.3% similar) in 259 aa overlap (11-221:232-479)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: ::::: . :
CCDS14 TARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTS--LDWNSDGTLLAMGSYDGFA
210 220 230 240 250
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. :::. ::. : :: :: :.:
CCDS14 RIWTENGN---LASTLGQ-HKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFP
260 270 280 290 300 310
100 110 120
pF1KB3 FE-----------------C----------------VTTLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : ::: :::
CCDS14 FHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLA
320 330 340 350 360 370
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---------SQELLASASYDD
.:: : .. .: . .. :: :..:.... . : : :. .:::::.:.
CCDS14 SCSDDMTLKIWSMKQD---ACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDS
380 390 400 410 420 430
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. :. :: :: :. :.:.::.:.:. ::: : :. :.::
CCDS14 TVRLWDVEQG--VCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKYVHIWNTQSGSLVHSY
440 450 460 470 480 490
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
CCDS14 QGTGGIFEVCWNARGDKVGASASDGSVCVLDL
500 510 520
>>CCDS48078.1 TBL1X gene_id:6907|Hs108|chrX (526 aa)
initn: 354 init1: 150 opt: 369 Z-score: 331.7 bits: 70.4 E(32554): 3.7e-12
Smith-Waterman score: 405; 34.0% identity (53.7% similar) in 259 aa overlap (11-221:234-481)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
CCDS48 TARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTS--LDWNTNGTLLATGSYDGFA
210 220 230 240 250 260
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. :::. ::. : :: :: :.:
CCDS48 RIWTEDGN---LASTLGQ-HKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFP
270 280 290 300 310
100 110 120
pF1KB3 FE-----------------C----------------VTTLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : ::: :::
CCDS48 FHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLA
320 330 340 350 360 370
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---------SQELLASASYDD
.:: : .. .: . .: :. :..:.... . : : :. .:::::.:.
CCDS48 SCSDDMTLKIWSMKQE---VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDS
380 390 400 410 420 430
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. :. :: :: :. :.:.::.:.:. ::: : :. :.::
CCDS48 TVRLWDIERG--VCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSY
440 450 460 470 480 490
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
CCDS48 RGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
500 510 520
>>CCDS14133.1 TBL1X gene_id:6907|Hs108|chrX (577 aa)
initn: 354 init1: 150 opt: 369 Z-score: 331.1 bits: 70.4 E(32554): 4e-12
Smith-Waterman score: 405; 34.0% identity (53.7% similar) in 259 aa overlap (11-221:285-532)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
CCDS14 TARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTS--LDWNTNGTLLATGSYDGFA
260 270 280 290 300 310
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. :::. ::. : :: :: :.:
CCDS14 RIWTEDGN---LASTLGQ-HKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFP
320 330 340 350 360
100 110 120
pF1KB3 FE-----------------C----------------VTTLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : ::: :::
CCDS14 FHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLA
370 380 390 400 410 420
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---------SQELLASASYDD
.:: : .. .: . .: :. :..:.... . : : :. .:::::.:.
CCDS14 SCSDDMTLKIWSMKQE---VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDS
430 440 450 460 470 480
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. :. :: :: :. :.:.::.:.:. ::: : :. :.::
CCDS14 TVRLWDIERG--VCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSY
490 500 510 520 530 540
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
CCDS14 RGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
550 560 570
>>CCDS32528.1 PAFAH1B1 gene_id:5048|Hs108|chr17 (410 aa)
initn: 391 init1: 155 opt: 342 Z-score: 310.1 bits: 66.0 E(32554): 6e-11
Smith-Waterman score: 374; 32.0% identity (58.3% similar) in 228 aa overlap (14-221:149-365)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIW
: :: .... .: :::::..: :..:
CCDS32 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDS-VQDISFDHSGKLLASCSADMTIKLW
120 130 140 150 160 170
50 60 70 80 90 100
pF1KB3 GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG
.: . : .. .::...: .:: : :....::: : : .:. : . :: :. :
CCDS32 DFQG--FECIRTM-HGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV-QTGY-CVKTFTG
180 190 200 210 220 230
110 120 130 140 150 160
pF1KB3 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE
:.. :. : .:.:.:.:: :..: :: : . :: . : : . :. . : : .
CCDS32 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK---ECKAELREHEHVVECISWAPESS
240 250 260 270 280
170 180 190 200
pF1KB3 --------------------LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD
.: :.: : :.:.. . . .: :: ::.. : .. :
CCDS32 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW--DVSTGMCLMTLVGHDNWVRGVLFH
290 300 310 320 330 340
210 220 230 240 250 260
pF1KB3 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL
.:. . ::.::.:.:.:
CCDS32 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW
350 360 370 380 390 400
339 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:20:53 2016 done: Fri Nov 4 02:20:53 2016
Total Scan time: 2.680 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]