Result of FASTA (omim) for
pF1KB3421
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3421, 243 aa
1>>>pF1KB3421 243 - 243 aa - 243 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9397+/-0.000319; mu= 7.2254+/- 0.020
mean_var=104.0555+/-20.932, 0's: 0 Z-trim(117.7): 4 B-trim: 1651 in 1/60
Lambda= 0.125731
statistics sampled from 29910 (29914) to 29910 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.351), width: 16
Scan time: 6.360
The best scores are: opt bits E(85289)
NP_001243731 (OMIM: 600454) 40S ribosomal protein ( 243) 1589 298.2 8.6e-81
NP_000996 (OMIM: 600454) 40S ribosomal protein S3 ( 243) 1589 298.2 8.6e-81
NP_001247435 (OMIM: 600454) 40S ribosomal protein ( 259) 1079 205.7 6.4e-53
NP_001247436 (OMIM: 600454) 40S ribosomal protein ( 117) 802 155.3 4.3e-38
>>NP_001243731 (OMIM: 600454) 40S ribosomal protein S3 i (243 aa)
initn: 1589 init1: 1589 opt: 1589 Z-score: 1571.4 bits: 298.2 E(85289): 8.6e-81
Smith-Waterman score: 1589; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KB3 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
190 200 210 220 230 240
pF1KB3 PTA
:::
NP_001 PTA
>>NP_000996 (OMIM: 600454) 40S ribosomal protein S3 isof (243 aa)
initn: 1589 init1: 1589 opt: 1589 Z-score: 1571.4 bits: 298.2 E(85289): 8.6e-81
Smith-Waterman score: 1589; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KB3 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
190 200 210 220 230 240
pF1KB3 PTA
:::
NP_000 PTA
>>NP_001247435 (OMIM: 600454) 40S ribosomal protein S3 i (259 aa)
initn: 1065 init1: 1065 opt: 1079 Z-score: 1071.0 bits: 205.7 E(85289): 6.4e-53
Smith-Waterman score: 1547; 93.8% identity (93.8% similar) in 259 aa overlap (1-243:1-259)
10 20 30 40 50 60
pF1KB3 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
10 20 30 40 50 60
70 80 90 100
pF1KB3 EKGRRIRELTAVVQKRFGFPEGSVEL----------------YAEKVATRGLCAIAQAES
:::::::::::::::::::::::::: ::::::::::::::::::
NP_001 EKGRRIRELTAVVQKRFGFPEGSVELKIMVMVTGYPLLPLKLYAEKVATRGLCAIAQAES
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPIS
190 200 210 220 230 240
230 240
pF1KB3 EQKGGKPEPPAMPQPVPTA
:::::::::::::::::::
NP_001 EQKGGKPEPPAMPQPVPTA
250
>>NP_001247436 (OMIM: 600454) 40S ribosomal protein S3 i (117 aa)
initn: 802 init1: 802 opt: 802 Z-score: 804.9 bits: 155.3 E(85289): 4.3e-38
Smith-Waterman score: 802; 100.0% identity (100.0% similar) in 117 aa overlap (127-243:1-117)
100 110 120 130 140 150
pF1KB3 CAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGL
::::::::::::::::::::::::::::::
NP_001 MESGAKGCEVVVSGKLRGQRAKSMKFVDGL
10 20 30
160 170 180 190 200 210
pF1KB3 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE
40 50 60 70 80 90
220 230 240
pF1KB3 ILPTTPISEQKGGKPEPPAMPQPVPTA
:::::::::::::::::::::::::::
NP_001 ILPTTPISEQKGGKPEPPAMPQPVPTA
100 110
243 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:21:35 2016 done: Fri Nov 4 02:21:36 2016
Total Scan time: 6.360 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]