Result of FASTA (ccds) for
pF1KB3423
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3423, 334 aa
1>>>pF1KB3423 334 - 334 aa - 334 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5871+/-0.00119; mu= 5.8354+/- 0.071
mean_var=151.6420+/-30.572, 0's: 0 Z-trim(107.5): 69 B-trim: 458 in 2/50
Lambda= 0.104151
statistics sampled from 9594 (9644) to 9594 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.296), width: 16
Scan time: 1.590
The best scores are: opt bits E(32554)
CCDS44121.1 NFYC gene_id:4802|Hs108|chr1 ( 334) 2167 337.5 9.4e-93
CCDS455.1 NFYC gene_id:4802|Hs108|chr1 ( 335) 2155 335.7 3.3e-92
CCDS81306.1 NFYC gene_id:4802|Hs108|chr1 ( 439) 1932 302.2 5e-82
CCDS44120.1 NFYC gene_id:4802|Hs108|chr1 ( 354) 1809 283.7 1.5e-76
CCDS81305.1 NFYC gene_id:4802|Hs108|chr1 ( 458) 1799 282.3 5.3e-76
CCDS44123.1 NFYC gene_id:4802|Hs108|chr1 ( 297) 1538 242.9 2.4e-64
CCDS44122.1 NFYC gene_id:4802|Hs108|chr1 ( 301) 1326 211.1 9.5e-55
>>CCDS44121.1 NFYC gene_id:4802|Hs108|chr1 (334 aa)
initn: 2167 init1: 2167 opt: 2167 Z-score: 1778.7 bits: 337.5 E(32554): 9.4e-93
Smith-Waterman score: 2167; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQLYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQLYQI
250 260 270 280 290 300
310 320 330
pF1KB3 QQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
::::::::::::::::::::::::::::::::::
CCDS44 QQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
310 320 330
>>CCDS455.1 NFYC gene_id:4802|Hs108|chr1 (335 aa)
initn: 1909 init1: 1909 opt: 2155 Z-score: 1768.9 bits: 335.7 E(32554): 3.3e-92
Smith-Waterman score: 2155; 99.7% identity (99.7% similar) in 335 aa overlap (1-334:1-335)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQ-LYQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS45 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ
250 260 270 280 290 300
300 310 320 330
pF1KB3 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
:::::::::::::::::::::::::::::::::::
CCDS45 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
310 320 330
>>CCDS81306.1 NFYC gene_id:4802|Hs108|chr1 (439 aa)
initn: 1922 init1: 1922 opt: 1932 Z-score: 1586.2 bits: 302.2 E(32554): 5e-82
Smith-Waterman score: 1932; 91.2% identity (95.2% similar) in 331 aa overlap (1-329:1-331)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQLYQI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: ..
CCDS81 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQRNSV
250 260 270 280 290 300
310 320 330
pF1KB3 QQVTMPAGQDLAQPMFIQSANQ--PSDGQAPQVTGD
::. . :.: ...... : .. :
CCDS81 QQARVSELTGEAEPREVKATGNSTPCTSSLPTTHPPSHRAGASCVCCSQPQQSSTSPPPS
310 320 330 340 350 360
CCDS81 DALQWVVVEVSGTPNQLETHRELHAPLPGMTSLSPLHPSQQLYQIQQVTMPAGQDLAQPM
370 380 390 400 410 420
>>CCDS44120.1 NFYC gene_id:4802|Hs108|chr1 (354 aa)
initn: 2028 init1: 1777 opt: 1809 Z-score: 1487.6 bits: 283.7 E(32554): 1.5e-76
Smith-Waterman score: 2107; 94.4% identity (94.4% similar) in 354 aa overlap (1-334:1-354)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQ-------------------ITQTE
:::::::::::::::::::::::::::::::::::: :::::
CCDS44 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQGQRNASQGKPRRCLKETLQITQTE
250 260 270 280 290 300
290 300 310 320 330
pF1KB3 VQQGQQQFSQFTDGQ-LYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
::::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS44 VQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
310 320 330 340 350
>>CCDS81305.1 NFYC gene_id:4802|Hs108|chr1 (458 aa)
initn: 2028 init1: 1777 opt: 1799 Z-score: 1477.9 bits: 282.3 E(32554): 5.3e-76
Smith-Waterman score: 1884; 86.3% identity (90.0% similar) in 350 aa overlap (1-329:1-350)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQ-------------------ITQTE
:::::::::::::::::::::::::::::::::::: :::::
CCDS81 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQGQRNASQGKPRRCLKETLQITQTE
250 260 270 280 290 300
290 300 310 320 330
pF1KB3 VQQGQQQFSQFTDGQLYQIQQVTMPAGQDLAQPMFIQSANQ--PSDGQAPQVTGD
::::::::::::::: ..::. . :.: ...... : .. :
CCDS81 VQQGQQQFSQFTDGQRNSVQQARVSELTGEAEPREVKATGNSTPCTSSLPTTHPPSHRAG
310 320 330 340 350 360
CCDS81 ASCVCCSQPQQSSTSPPPSDALQWVVVEVSGTPNQLETHRELHAPLPGMTSLSPLHPSQQ
370 380 390 400 410 420
>>CCDS44123.1 NFYC gene_id:4802|Hs108|chr1 (297 aa)
initn: 1292 init1: 1292 opt: 1538 Z-score: 1268.6 bits: 242.9 E(32554): 2.4e-64
Smith-Waterman score: 1831; 88.4% identity (88.4% similar) in 335 aa overlap (1-334:1-297)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVK-
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
:::::::::::::::::::::::
CCDS44 -------------------------------------RNDIAMAITKFDQFDFLIDIVPR
60 70 80
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
150 160 170 180 190 200
250 260 270 280 290
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQ-LYQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS44 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ
210 220 230 240 250 260
300 310 320 330
pF1KB3 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
:::::::::::::::::::::::::::::::::::
CCDS44 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
270 280 290
>>CCDS44122.1 NFYC gene_id:4802|Hs108|chr1 (301 aa)
initn: 1481 init1: 1230 opt: 1326 Z-score: 1096.4 bits: 211.1 E(32554): 9.5e-55
Smith-Waterman score: 1855; 89.6% identity (89.6% similar) in 335 aa overlap (1-334:1-301)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
:::::::: ::::::::::::::::::
CCDS44 AQPQQGQT----------------------------------MQVMQQIITNTGEIQQIP
190 200
250 260 270 280 290
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQ-LYQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS44 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ
210 220 230 240 250 260
300 310 320 330
pF1KB3 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
:::::::::::::::::::::::::::::::::::
CCDS44 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
270 280 290 300
334 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:58:04 2016 done: Thu Nov 3 20:58:05 2016
Total Scan time: 1.590 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]