Result of FASTA (ccds) for
pF1KB3428
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3428, 423 aa
1>>>pF1KB3428 423 - 423 aa - 423 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8399+/-0.000886; mu= 14.6033+/- 0.053
mean_var=73.6545+/-14.903, 0's: 0 Z-trim(105.7): 15 B-trim: 0 in 0/52
Lambda= 0.149443
statistics sampled from 8559 (8564) to 8559 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.263), width: 16
Scan time: 2.690
The best scores are: opt bits E(32554)
CCDS10272.1 MPI gene_id:4351|Hs108|chr15 ( 423) 2807 614.6 5.5e-176
CCDS81908.1 MPI gene_id:4351|Hs108|chr15 ( 403) 2661 583.1 1.6e-166
CCDS73758.1 MPI gene_id:4351|Hs108|chr15 ( 373) 2467 541.3 5.8e-154
CCDS73756.1 MPI gene_id:4351|Hs108|chr15 ( 287) 1871 412.8 2.2e-115
CCDS73757.1 MPI gene_id:4351|Hs108|chr15 ( 362) 1327 295.5 5.5e-80
>>CCDS10272.1 MPI gene_id:4351|Hs108|chr15 (423 aa)
initn: 2807 init1: 2807 opt: 2807 Z-score: 3273.0 bits: 614.6 E(32554): 5.5e-176
Smith-Waterman score: 2807; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)
10 20 30 40 50 60
pF1KB3 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 VLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRAC
370 380 390 400 410 420
pF1KB3 CLL
:::
CCDS10 CLL
>>CCDS81908.1 MPI gene_id:4351|Hs108|chr15 (403 aa)
initn: 2661 init1: 2661 opt: 2661 Z-score: 3103.2 bits: 583.1 E(32554): 1.6e-166
Smith-Waterman score: 2661; 100.0% identity (100.0% similar) in 403 aa overlap (21-423:1-403)
10 20 30 40 50 60
pF1KB3 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
::::::::::::::::::::::::::::::::::::::::
CCDS81 MGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
10 20 30 40
70 80 90 100 110 120
pF1KB3 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB3 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB3 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB3 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB3 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB3 VLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRAC
350 360 370 380 390 400
pF1KB3 CLL
:::
CCDS81 CLL
>>CCDS73758.1 MPI gene_id:4351|Hs108|chr15 (373 aa)
initn: 2467 init1: 2467 opt: 2467 Z-score: 2877.6 bits: 541.3 E(32554): 5.8e-154
Smith-Waterman score: 2467; 100.0% identity (100.0% similar) in 373 aa overlap (51-423:1-373)
30 40 50 60 70 80
pF1KB3 MGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAKILDNRISQKTLSQWIAENQD
::::::::::::::::::::::::::::::
CCDS73 MGTHPRGDAKILDNRISQKTLSQWIAENQD
10 20 30
90 100 110 120 130 140
pF1KB3 SLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEKLHLQAPQHYPDANHKPEMAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEKLHLQAPQHYPDANHKPEMAI
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB3 ALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLKQTMSHDSQAVASSLQSCFSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLKQTMSHDSQAVASSLQSCFSH
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB3 LMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQLHQQYPGDIGCFAIYFLNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQLHQQYPGDIGCFAIYFLNLL
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB3 TLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTPKFIDVPTLCEMLSYTPSSSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTPKFIDVPTLCEMLSYTPSSSK
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB3 DRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYKVLALDSASILLMVQGTVIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYKVLALDSASILLMVQGTVIAS
280 290 300 310 320 330
390 400 410 420
pF1KB3 TPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRACCLL
:::::::::::::::::::::::::::::::::::::::::::
CCDS73 TPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRACCLL
340 350 360 370
>>CCDS73756.1 MPI gene_id:4351|Hs108|chr15 (287 aa)
initn: 1869 init1: 1869 opt: 1871 Z-score: 2185.0 bits: 412.8 E(32554): 2.2e-115
Smith-Waterman score: 1871; 98.6% identity (98.6% similar) in 286 aa overlap (1-286:1-286)
10 20 30 40 50 60
pF1KB3 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
::::::::::::::::::::::::::::::::::::::::: :
CCDS73 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGGPWLCH
250 260 270 280
310 320 330 340 350 360
pF1KB3 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
>>CCDS73757.1 MPI gene_id:4351|Hs108|chr15 (362 aa)
initn: 1327 init1: 1327 opt: 1327 Z-score: 1549.5 bits: 295.5 E(32554): 5.5e-80
Smith-Waterman score: 2287; 85.3% identity (85.6% similar) in 423 aa overlap (1-423:1-362)
10 20 30 40 50 60
pF1KB3 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
::::::::::::::::::::::::::::::::::::::::::
CCDS73 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLK------------------
130 140 150 160
190 200 210 220 230 240
pF1KB3 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
.::::::::::::::::
CCDS73 -------------------------------------------TAAGNNMEDIFGELLLQ
170
250 260 270 280 290 300
pF1KB3 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
180 190 200 210 220 230
310 320 330 340 350 360
pF1KB3 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
240 250 260 270 280 290
370 380 390 400 410 420
pF1KB3 VLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRAC
300 310 320 330 340 350
pF1KB3 CLL
:::
CCDS73 CLL
360
423 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:59:52 2016 done: Sat Nov 5 04:59:52 2016
Total Scan time: 2.690 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]