FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3433, 427 aa
  1>>>pF1KB3433 427 - 427 aa - 427 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3058+/-0.000892; mu= 13.2828+/- 0.054
 mean_var=90.9997+/-17.864, 0's: 0 Z-trim(108.0): 20  B-trim: 60 in 2/50
 Lambda= 0.134448
 statistics sampled from 9923 (9932) to 9923 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.305), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS10218.1 RPL4 gene_id:6124|Hs108|chr15          ( 427) 2795 552.2 3.6e-157


>>CCDS10218.1 RPL4 gene_id:6124|Hs108|chr15               (427 aa)
 initn: 2795 init1: 2795 opt: 2795  Z-score: 2935.3  bits: 552.2 E(32554): 3.6e-157
Smith-Waterman score: 2795; 99.8% identity (99.8% similar) in 427 aa overlap (1-427:1-427)

               10        20        30        40        50        60
pF1KB3 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILCQARNHKLRVDKAAAAAAA
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS10 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 LQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTT
              370       380       390       400       410       420

              
pF1KB3 EEKKPAA
       :::::::
CCDS10 EEKKPAA
              




427 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:24:44 2016 done: Fri Nov  4 02:24:44 2016
 Total Scan time:  2.390 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]