FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3433, 427 aa
  1>>>pF1KB3433 427 - 427 aa - 427 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0513+/-0.000369; mu= 14.6244+/- 0.023
 mean_var=89.4494+/-18.061, 0's: 0 Z-trim(114.7): 13  B-trim: 482 in 2/55
 Lambda= 0.135608
 statistics sampled from 24620 (24630) to 24620 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.289), width:  16
 Scan time:  7.040

The best scores are:                                      opt bits E(85289)
NP_000959 (OMIM: 180479) 60S ribosomal protein L4  ( 427) 2795 556.9 3.6e-158


>>NP_000959 (OMIM: 180479) 60S ribosomal protein L4 [Hom  (427 aa)
 initn: 2795 init1: 2795 opt: 2795  Z-score: 2960.7  bits: 556.9 E(85289): 3.6e-158
Smith-Waterman score: 2795; 99.8% identity (99.8% similar) in 427 aa overlap (1-427:1-427)

               10        20        30        40        50        60
pF1KB3 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILCQARNHKLRVDKAAAAAAA
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
NP_000 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 LQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTT
              370       380       390       400       410       420

              
pF1KB3 EEKKPAA
       :::::::
NP_000 EEKKPAA
              




427 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:24:44 2016 done: Fri Nov  4 02:24:45 2016
 Total Scan time:  7.040 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]