FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3434, 323 aa
  1>>>pF1KB3434 323 - 323 aa - 323 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4449+/-0.000678; mu= 13.2162+/- 0.041
 mean_var=129.0965+/-25.475, 0's: 0 Z-trim(115.4): 17  B-trim: 0 in 0/54
 Lambda= 0.112880
 statistics sampled from 15959 (15974) to 15959 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.491), width:  16
 Scan time:  2.850

The best scores are:                                      opt bits E(32554)
CCDS12800.1 CLEC11A gene_id:6320|Hs108|chr19       ( 323) 2259 378.2 4.8e-105


>>CCDS12800.1 CLEC11A gene_id:6320|Hs108|chr19            (323 aa)
 initn: 2259 init1: 2259 opt: 2259  Z-score: 1999.3  bits: 378.2 E(32554): 4.8e-105
Smith-Waterman score: 2259; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)

               10        20        30        40        50        60
pF1KB3 MQAAWLLGALVVPQLLGFGHGARGAEREWEGGWGGAQEEEREREALMLKHLQEALGLPAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MQAAWLLGALVVPQLLGFGHGARGAEREWEGGWGGAQEEEREREALMLKHLQEALGLPAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 RGDENPAGTVEGKEDWEMEEDQGEEEEEEATPTPSSGPSPSPTPEDIVTYILGRLAGLDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RGDENPAGTVEGKEDWEMEEDQGEEEEEEATPTPSSGPSPSPTPEDIVTYILGRLAGLDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GLHQLHVRLHALDTRVVELTQGLRQLRNAAGDTRDAVQALQEAQGRAEREHGRLEGCLKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GLHQLHVRLHALDTRVVELTQGLRQLRNAAGDTRDAVQALQEAQGRAEREHGRLEGCLKG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LRLGHKCFLLSRDFEAQAAAQARCTARGGSLAQPADRQQMEALTRYLRAALAPYNWPVWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LRLGHKCFLLSRDFEAQAAAQARCTARGGSLAQPADRQQMEALTRYLRAALAPYNWPVWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 GVHDRRAEGLYLFENGQRVSFFAWHRSPRPELGAQPSASPHPLSPDQPNGGTLENCVAQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GVHDRRAEGLYLFENGQRVSFFAWHRSPRPELGAQPSASPHPLSPDQPNGGTLENCVAQA
              250       260       270       280       290       300

              310       320   
pF1KB3 SDDGSWWDHDCQRRLYYVCEFPF
       :::::::::::::::::::::::
CCDS12 SDDGSWWDHDCQRRLYYVCEFPF
              310       320   




323 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:06:59 2016 done: Fri Nov  4 21:06:59 2016
 Total Scan time:  2.850 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]