FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3443, 248 aa
  1>>>pF1KB3443 248 - 248 aa - 248 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8188+/-0.000959; mu= 12.0172+/- 0.057
 mean_var=72.7352+/-14.238, 0's: 0 Z-trim(104.7): 16  B-trim: 0 in 0/50
 Lambda= 0.150384
 statistics sampled from 8049 (8051) to 8049 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.247), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS6212.1 RPL7 gene_id:6129|Hs108|chr8            ( 248) 1619 360.4 6.3e-100


>>CCDS6212.1 RPL7 gene_id:6129|Hs108|chr8                 (248 aa)
 initn: 1619 init1: 1619 opt: 1619  Z-score: 1907.5  bits: 360.4 E(32554): 6.3e-100
Smith-Waterman score: 1619; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KB3 MEGVEEKKKEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MEGVEEKKKEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 YRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 TFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 KYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQI
              190       200       210       220       230       240

               
pF1KB3 NRLIRRMN
       ::::::::
CCDS62 NRLIRRMN
               




248 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:03:26 2016 done: Sat Nov  5 05:03:26 2016
 Total Scan time:  2.150 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]